CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0476500

Gene name
Homology with Arabidopsis Similar to At3g66654: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (HF=1e-5)

Module size 6 genes

NF 0.37

%ile 42.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.96 Os07g0476500 AK066346.1 - Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein 1e-5 At3g66654 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein O.I. H.G. S.X.
0.53 71.3 0.96 Os06g0164100 AK064345.1 - Serine/threonine protein phosphatase PP1 (EC3.1.3.16) 4e-55 At1g64040 TOPP3 O.I. H.G. S.X.
0.50 68.0 0.96 Os07g0232200 AK103406.1 - Cytochrome b5 domain containing protein 4e-8 At5g09680 cytochrome b5 domain-containing protein O.I. H.G. S.X.
0.38 46.9 0.96 Os12g0277400 AK102429.1 - The start codon is not identified. 5e-4 At1g76390 armadillo/beta-catenin repeat family protein / U-box domain-containing protein O.I. H.G. S.X.
0.32 36.3 0.96 Os06g0301000 AK073960.1 - Zn-finger, RING domain containing protein 4e-3 At1g65040 protein binding / zinc ion binding O.I. H.G. S.X.
0.17 12.6 0.96 Os01g0141100 AK062139.1 - ATPase of the AAA+ class 4e-52 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.3 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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