CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0425000

Gene name
Homology with Arabidopsis Similar to At3g28740: CYP81D1 (HF=6e-1)

Module size 9 genes

NF 0.57

%ile 76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 96.0 0.92 Os07g0425000 AK108531.1 - Conserved hypothetical protein 6e-1 At3g28740 CYP81D1 O.I. H.G. S.X.
0.80 94.6 0.91 Os01g0175700 CB624018 - HCO3-transporter domain containing protein 2e-5 At1g15460 BOR4 (REQUIRES HIGH BORON 4) O.I. H.G. S.X.
0.61 81.2 0.93 Os03g0594900 AK069017.1 - Cytochrome P450 family protein 4e+0 At5g46030 unknown protein O.I. H.G. S.X.
0.61 81.2 0.92 Os04g0578200 AK073300.1 - Conserved hypothetical protein 6e-1 At3g12977 DNA binding O.I. H.G. S.X.
0.53 71.3 0.93 Os01g0700100 AK059965.1 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At3g53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) O.I. H.G. S.X.
0.48 63.7 0.90 Os01g0823600 CF305219 - Conserved hypothetical protein 1e+0 At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein O.I. H.G. S.X.
0.43 55.4 0.92 Os03g0228200 9631.m01196 - Conserved hypothetical protein 2e-2 At2g23790 unknown protein O.I. H.G. S.X.
0.41 52.4 0.93 Os02g0704300 AK058932.1 - Hypothetical protein 3e-6 At5g35970 DNA-binding protein, putative O.I. H.G. S.X.
0.38 46.9 0.95 Os01g0666600 CF325024 - Conserved hypothetical protein 5e+0 At3g58380 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.9 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.5 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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