CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0421600

Gene name
Homology with Arabidopsis Similar to At4g38740: ROC1 (ROTAMASE CYP 1) (HF=7e-1)

Module size 16 genes

NF 0.53

%ile 71.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.99 Os07g0421600 9635.m02286 - - 7e-1 At4g38740 ROC1 (ROTAMASE CYP 1) O.I. H.G. S.X.
0.70 88.4 0.99 Os05g0234400 9633.m01264 - - 1e+0 At1g06380 ribosomal protein-related O.I. H.G. S.X.
0.61 81.2 0.99 Os02g0297100 9630.m01857 - - 3e-2 At2g28160 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) O.I. H.G. S.X.
0.60 79.7 0.99 Os04g0643500 9632.m05354 - 2OG-Fe(II) oxygenase superfamily protein 2e+0 At5g40860 unknown protein O.I. H.G. S.X.
0.58 77.0 0.99 Os08g0164732 9636.m00615 - - 4e-1 At4g19200 proline-rich family protein O.I. H.G. S.X.
0.56 76.3 0.99 Os06g0558501 9634.m03450 - - 2e+0 At1g53285 unknown protein O.I. H.G. S.X.
0.53 71.3 0.99 Os08g0533200 9636.m04275 - - 4e-1 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) O.I. H.G. S.X.
0.51 68.7 0.99 Os01g0786700 NM_190834.1 - Conserved hypothetical protein 1e+1 At5g47870 unknown protein O.I. H.G. S.X.
0.48 63.7 0.99 Os01g0319500 9629.m02075 - - 8e-2 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.48 63.7 0.99 Os07g0480500 NM_187318.1 - - 2e+0 At1g49500 unknown protein O.I. H.G. S.X.
0.48 63.7 0.99 Os07g0547100 NM_185720.1 - - 7e-1 At3g30768 unknown protein O.I. H.G. S.X.
0.47 62.3 0.99 Os07g0585400 NM_187008.1 - - 8e+0 At5g42655 - O.I. H.G. S.X.
0.44 58.1 0.99 Os04g0274300 9632.m01879 - Arabinoxylan arabinofuranohydrolase isoenzymeAXAH-II 3e+0 At2g23320 WRKY15 O.I. H.G. S.X.
0.44 58.1 0.99 Os04g0252300 AK120806.1 - The start codon is not identified. 6e-1 At5g24440 CID13 (CTC-Interacting Domain 13) O.I. H.G. S.X.
0.41 52.4 0.99 Os06g0545100 9634.m03339 - - 4e+0 At1g14225 unknown protein O.I. H.G. S.X.
0.36 44.0 0.99 Os02g0799200 9630.m05523 - - 1e-1 At5g22545 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.9 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.061 1 GO:0006633 The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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