CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0417200

Gene name
Homology with Arabidopsis Similar to At1g76930: ATEXT4 (EXTENSIN 4) (HF=8e-1)

Module size 6 genes

NF 0.10

%ile 8.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.78 Os07g0417200 AK105371.1 - Delta-12 oleate desaturase 8e-1 At1g76930 ATEXT4 (EXTENSIN 4) O.I. H.G. S.X.
0.67 87.2 0.76 Os04g0178400 AK071864.1 - Cytochrome P450 CYP99A1 (EC 1.14.-.-) (Fragment) 9e-1 At2g05440 glycine-rich protein O.I. H.G. S.X.
0.40 51.1 0.78 Os04g0178300 AK100631.1 - Copalyl diphosphate synthetase (Fragment) 3e-1 At4g01200 C2 domain-containing protein O.I. H.G. S.X.
0.14 9.3 0.78 Os07g0416900 AK070559.1 - Omega-6 fatty acid desaturase, endoplasmicreticulum isozyme 2 (EC 1.14.19.-) 7e-1 At4g20690 unknown protein O.I. H.G. S.X.
0.08 4.2 0.72 Os11g0112200 AK108385.1 - Cationic peroxidase 1 precursor (EC 1.11.1.7)(PNPC1) 4e-8 At1g68850 peroxidase, putative O.I. H.G. S.X.
0.02 1.0 0.72 Os03g0151500 AK109181.1 - Hypothetical protein 1e+0 At1g35430 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.0 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.2 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0051502 The chemical reactions and pathways resulting in the formation of diterpene phytoalexins, terpenoids with 20 carbons produced by plants in response to environmental stresses.
0.200 1 GO:0051504 A branched pathway that produces the precursors to four structurally distinct types of polycyclic diterpenes. The pathway starts with the cyclization of geranylgeranyl diphosphate into ent-copalyl diphosphate and syn-copalyl diphosphate. The catalytic conversion by diterpene cyclases of these two compounds produces the four diterpene hydrocarbons which are precursors to the four structurally distinct classes of diterpene phytoalexins.
0.111 1 GO:0009685 The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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