CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0404100

Gene name
Homology with Arabidopsis Similar to At5g47175: LCR3 (Low-molecular-weight cysteine-rich 3) (HF=5e-2)

Module size 6 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os07g0404100 9635.m02067 - - 5e-2 At5g47175 LCR3 (Low-molecular-weight cysteine-rich 3) O.I. H.G. S.X.
0.67 87.2 0.99 Os10g0133700 9638.m00355 - - 1e+0 At3g19184 DNA binding O.I. H.G. S.X.
0.50 68.0 0.99 Os07g0248401 9635.m01434 - - 3e+0 At1g70400 - O.I. H.G. S.X.
0.33 38.8 0.99 Os02g0481400 9630.m02667 - - 2e+0 At3g10400 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.32 36.3 0.99 Os10g0565700 AK122019.1 - Conserved hypothetical protein 6e+0 At5g61500 ATG3 O.I. H.G. S.X.
0.31 34.5 0.99 Os04g0280600 9632.m01942 - - 8e-7 At5g14180 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
38.5 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.2 99.1 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.6 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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