Co-expression analysis

Gene ID Os07g0300300
Gene name
Homology with ArabidopsisSimilar to At5g16830: SYP21 (SYNTAXIN OF PLANTS 21) (HF=3e-4)
Module size 17 genes
NF 0.32
%ile 34.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.40.99Os07g03003009635.m02022--3e-4At5g16830SYP21 (SYNTAXIN OF PLANTS 21)O.I.H.G.S.X.
0.4863.70.99Os05g0125300CB672140-Receptor protein kinase-like protein4e-1At4g13190ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseO.I.H.G.S.X.
0.3948.30.99Os08g0435800AK121712.1-Lipoate protein ligase-like protein1e+0At3g07260forkhead-associated domain-containing protein / FHA domain-containing proteinO.I.H.G.S.X.
0.3644.00.99Os03g02084009631.m01014-Hypothetical protein2e-1At5g50840-O.I.H.G.S.X.
0.3541.70.99Os08g03461009636.m02531--8e+0At5g46871-O.I.H.G.S.X.
0.3134.50.99Os10g01787009638.m00875--6e+0At1g70700TIFY7O.I.H.G.S.X.
0.3032.70.99Os08g01320009636.m00295--1e-1At5g58375unknown proteinO.I.H.G.S.X.
0.3032.70.99Os02g0142400AK106722.1-Conserved hypothetical protein1e+0At2g28305unknown proteinO.I.H.G.S.X.
0.2931.10.99Os12g02756669640.m01731--7e+0At5g22870harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.2831.10.99Os04g03168009632.m02349-FAR1 domain containing protein2e+0At1g04190tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.2727.50.99Os07g02708009635.m01701--3e-1At4g19080unknown proteinO.I.H.G.S.X.
0.2727.50.99Os05g03008009633.m02088--2e-1At1g23680unknown proteinO.I.H.G.S.X.
0.2625.60.99Os05g04809009633.m03755--2e+0At5g03130unknown proteinO.I.H.G.S.X.
0.2625.60.99Os09g01178009637.m00134--3e+0At5g26100unknown proteinO.I.H.G.S.X.
0.2524.11.00Os10g0100100NM_194469.1--7e-1At1g28190unknown proteinO.I.H.G.S.X.
0.2321.20.99Os02g05178009630.m03010--7e-2At3g58370K-Cl Co-transporter type 1 protein-related / KCC1 protein-relatedO.I.H.G.S.X.
0.1915.10.99Os06g05876009634.m03702--2e+0At3g60570ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.098.9GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.098.8GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
14.698.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.598.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.798.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0291GO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage