Co-expression analysis

Gene ID Os07g0297300
Gene name
Homology with ArabidopsisSimilar to At2g25500: - (HF=2e+0)
Module size 6 genes
NF 0.55
%ile 73.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.97Os07g0297300AU166460-Conserved hypothetical protein2e+0At2g25500-O.I.H.G.S.X.
0.7391.10.97Os08g0377400AK105467.1-XPMC2 protein3e-1At4g28840unknown proteinO.I.H.G.S.X.
0.5573.70.97Os01g0559200AK102611.1-Hypothetical protein4e-2At2g46140late embryogenesis abundant protein, putative / LEA protein, putativeO.I.H.G.S.X.
0.5068.00.97Os05g0376200AK099085.1-Cell division control protein 48 homolog B(AtCDC48b)5e-18At2g03670CDC48BO.I.H.G.S.X.
0.2931.10.97Os10g0567500AK072336.1-Intron maturase, type II family protein4e-7At5g46920intron maturase, type II family proteinO.I.H.G.S.X.
0.2727.50.97Os10g0561200AK066634.1-Conserved hypothetical protein4e+0At4g39260GR-RBP8O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.398.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.198.8GSM159205Inflorescence (P6, 22 - 30 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
17.098.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.398.8GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.098.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.298.7GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.198.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.898.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.598.6GSM159204Inflorescence (P6, 22 - 30 cm), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
14.298.5GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0871GO:0008380The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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