CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0277200

Gene name
Homology with Arabidopsis Similar to At1g62040: ATG8C (autophagy 8c) (HF=1e+0)

Module size 6 genes

NF 0.06

%ile 4.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.32 36.3 0.77 Os07g0277200 AK058657.1 - - 1e+0 At1g62040 ATG8C (autophagy 8c) O.I. H.G. S.X.
0.44 58.1 0.80 Os10g0178500 AK066178.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 3e+0 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.33 38.8 0.78 Os01g0227800 CB621372 - Cytochrome P450 family protein 4e+0 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.03 1.4 0.76 Os02g0644600 AK067055.1 - Protein prenyltransferase domain containingprotein 2e+0 At1g43630 unknown protein O.I. H.G. S.X.
0.03 1.4 0.77 Os01g0849000 AK105208.1 - - 2e-2 At1g28190 unknown protein O.I. H.G. S.X.
0.02 1.0 0.79 Os06g0367100 AK066930.1 - Glycoside hydrolase, family 13, N-terminal domaincontaining protein 2e-6 At3g20440 alpha-amylase/ catalytic/ cation binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
88.4 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
53.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
9.0 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.063 1 GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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