CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0251200

Gene name
Homology with Arabidopsis Similar to At1g80100: AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6) (HF=5e-1)

Module size 6 genes

NF 0.08

%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.84 Os07g0251200 CF337705 - Harpin-induced 1 domain containing protein 5e-1 At1g80100 AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6) O.I. H.G. S.X.
0.43 55.4 0.85 Os07g0680400 AK110900.1 - DNA-binding WRKY domain containing protein 1e-3 At2g30250 WRKY25 O.I. H.G. S.X.
0.38 46.9 0.83 Os04g0468600 AK102569.1 - Conserved hypothetical protein 2e+0 At2g05910 unknown protein O.I. H.G. S.X.
0.29 31.1 0.86 Os06g0297500 BM038601 - Hypothetical protein 1e+0 At5g55120 VTC5 (VITAMIN C DEFECTIVE 5) O.I. H.G. S.X.
0.04 2.0 0.82 Os02g0712700 9630.m04699 - Legume lectin, beta domain containing protein 3e-4 At5g06740 lectin protein kinase family protein O.I. H.G. S.X.
0.02 1.0 0.82 Os09g0434800 CB651281 - - 4e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.9 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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