CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0248900

Gene name
Homology with Arabidopsis Similar to At4g29470: phospholipase A2, putative (HF=2e+0)

Module size 15 genes

NF 0.34

%ile 38.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 0.97 Os07g0248900 AK066571.1 - Hypothetical protein 2e+0 At4g29470 phospholipase A2, putative O.I. H.G. S.X.
0.50 68.0 0.98 Os05g0464100 AK073132.1 - Conserved hypothetical protein 2e+0 At5g43250 NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13) O.I. H.G. S.X.
0.48 63.7 0.98 Os12g0211000 AK101792.1 - Hypothetical protein 3e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) O.I. H.G. S.X.
0.44 58.1 0.99 Os01g0571400 9629.m03712 - - 2e-1 At4g27310 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.42 53.9 0.98 Os12g0290800 AK062678.1 - Hypothetical protein 1e+0 At2g26810 unknown protein O.I. H.G. S.X.
0.42 53.9 0.99 Os12g0425200 9640.m02256 - - 5e+0 At5g04440 unknown protein O.I. H.G. S.X.
0.40 51.1 0.98 Os10g0318300 9638.m01394 - Conserved hypothetical protein 6e-1 At5g42330 unknown protein O.I. H.G. S.X.
0.35 41.7 0.98 Os04g0201900 9632.m01129 - Curculin-like (mannose-binding) lectin domaincontaining protein 1e-1 At4g02630 protein kinase family protein O.I. H.G. S.X.
0.33 38.8 0.98 Os05g0469900 AK109700.1 - Conserved hypothetical protein 9e-1 At1g62640 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III) O.I. H.G. S.X.
0.29 31.1 0.98 Os09g0528300 AK121125.1 - Conserved hypothetical protein 1e-1 At1g26665 - O.I. H.G. S.X.
0.29 31.1 0.99 Os07g0446200 9635.m02551 - - 2e+0 At5g06290 2-Cys Prx B (2-Cysteine peroxiredoxin B) O.I. H.G. S.X.
0.26 25.6 0.99 Os08g0514800 NM_188984.1 - Conserved hypothetical protein 1e+1 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.25 24.1 0.98 Os02g0310500 9630.m01981 - - 5e-1 At3g49910 60S ribosomal protein L26 (RPL26A) O.I. H.G. S.X.
0.22 19.4 0.99 Os06g0536700 9634.m03247 - - 1e+0 At2g19330 leucine-rich repeat family protein O.I. H.G. S.X.
0.12 7.2 0.98 Os12g0127600 9640.m00254 - WRKY transcription factor 57 4e-4 At5g60140 transcriptional factor B3 family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.4 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.9 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.2 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0006270 The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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