Co-expression analysis

Gene ID Os07g0245100
Gene name
Homology with ArabidopsisSimilar to At5g28050: cytidine/deoxycytidylate deaminase family protein (HF=8e-48)
Module size 6 genes
NF 0.35
%ile 39.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.86Os07g0245100AK100710.1-Nitrogen fixation protein8e-48At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.6079.70.85Os02g0736400AK065229.1-Dihydroorotate dehydrogenase family protein4e-24At3g17810dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family proteinO.I.H.G.S.X.
0.5068.00.89Os03g0701200AK099563.1-Haloacid dehalogenase-like hydrolase domaincontaining protein6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.5068.00.90Os05g0542200AK071306.1-Epoxide hydrolase family protein7e-2At5g53050hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.4762.30.86Os02g0191300AK069748.1-Amino acid/polyamine transporter II family protein4e-9At5g38820amino acid transporter family proteinO.I.H.G.S.X.
0.138.20.85Os05g0125500CB660386-Isovaleryl-CoA dehydrogenase, mitochondrialprecursor (EC 1.3.99.10) (IVD)1e-26At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.998.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.798.7GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.598.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.498.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.398.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.798.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.798.4GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377083Genomic DNA - 45 day old leaf sample - mutant g6989GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2001GO:0006207The chemical reactions and pathways resulting in the formation of pyrimidine bases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.Link to AmiGO
0.0421GO:0006865The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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