CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0241900

Gene name
Homology with Arabidopsis Similar to At1g23910: - (HF=1e+0)

Module size 9 genes

NF 0.54

%ile 73.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.97 Os07g0241900 NM_186800.1 - - 1e+0 At1g23910 - O.I. H.G. S.X.
0.74 91.4 0.98 Os02g0707500 AK107442.1 - Conserved hypothetical protein 6e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.71 89.6 0.98 Os03g0661200 9631.m04448 - - 9e-1 At3g03150 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0668900 AK110235.1 - Conserved hypothetical protein 5e-1 At4g13160 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os10g0318100 NM_195619.1 - - 1e+1 At5g62330 - O.I. H.G. S.X.
0.59 78.0 0.98 Os01g0862500 AK120019.1 - IQ calmodulin-binding region domain containingprotein 3e+0 At5g23850 - O.I. H.G. S.X.
0.47 62.3 0.99 Os01g0739850 9629.m05232 - - 6e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) O.I. H.G. S.X.
0.39 48.3 0.98 Os02g0524150 9630.m03070 - - 4e+0 At2g24860 chaperone protein dnaJ-related O.I. H.G. S.X.
0.35 41.7 0.98 Os12g0592700 9640.m03924 - - 2e+0 At4g20320 CTP synthase/ catalytic O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.4 98.8 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
15.7 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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