CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0227700

Gene name
Homology with Arabidopsis Similar to At4g13970: zinc ion binding (HF=2e-5)

Module size 6 genes

NF 0.70

%ile 92.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.98 Os07g0227700 AK120258.1 - Conserved hypothetical protein 2e-5 At4g13970 zinc ion binding O.I. H.G. S.X.
0.73 91.1 0.97 Os09g0110200 9637.m00069 - Protein prenyltransferase domain containingprotein 8e-2 At1g29710 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.67 87.2 0.98 Os11g0109900 9639.m00089 - Double-stranded RNA binding domain containingprotein 7e-38 At3g08850 RAPTOR1 O.I. H.G. S.X.
0.61 81.2 0.98 Os10g0104700 AK072615.1 - Octicosapeptide/Phox/Bem1p domain containingprotein 3e-2 At2g46640 unknown protein O.I. H.G. S.X.
0.59 78.0 0.97 Os01g0164500 AK068747.1 - ATP-dependent RNA helicase-like protein 2e-11 At5g05450 DEAD/DEAH box helicase, putative (RH18) O.I. H.G. S.X.
0.55 73.7 0.98 Os01g0788900 AK105428.1 - TPR-like domain containing protein 6e-18 At1g69290 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.4 99.7 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
21.3 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.9 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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