CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0222900

Gene name
Homology with Arabidopsis Similar to At3g52720: ACA1 (ALPHA CARBONIC ANHYDRASE 1) (HF=3e+0)

Module size 6 genes

NF 0.56

%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.90 Os07g0222900 CB645570 - KDPG and KHG aldolase family protein 3e+0 At3g52720 ACA1 (ALPHA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.59 78.0 0.92 Os07g0510100 AK066776.1 - Methionine aminopeptidase-like protein 3e-19 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.53 71.3 0.90 Os11g0544000 AK066017.1 - - 7e-2 At1g19990 unknown protein O.I. H.G. S.X.
0.50 68.0 0.94 Os01g0306800 AK099426.1 - Conserved hypothetical protein 9e-1 At5g42370 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0829000 AK065327.1 - Conserved hypothetical protein 7e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.27 27.5 0.93 Os03g0736400 AK105812.1 - Conserved hypothetical protein 95 family protein 1e-24 At3g28460 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	73.7	0.85	Os08g0508500	AU222529	-	Peptidase aspartic family protein	3e+0	At4g10280	-	O.I.	H.G.	S.X.
0.43	55.4	0.80	Os12g0231000	AK120737.1	-	TGF-beta receptor, type I/II extracellular regionfamily protein	1e+0	At1g68480	JAG (JAGGED)	O.I.	H.G.	S.X.
0.40	51.1	0.91	Os01g0343500	AK071988.1	-	TPR repeat containing protein	9e-10	At3g05625	binding	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os08g0345400	AK065348.1	-	Conserved hypothetical protein	1e-2	At2g04360	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os01g0618400	NM_192814.1	-	RNA helicase (Fragment)	2e-20	At5g63630	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.
0.34	40.0	0.69	Os01g0750100	AK067329.1	-	WRKY transcription factor 31	1e-11	At3g58710	WRKY69	O.I.	H.G.	S.X.
0.28	31.1	0.93	Os10g0512500	AK067203.1	-	Protein of unknown function UPF0044 family protein	1e+0	At1g18210	calcium-binding protein, putative	O.I.	H.G.	S.X.
0.26	25.6	0.91	Os02g0273800	AK071312.1	-	TPR-like domain containing protein	2e-5	At2g32230	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.24	22.4	0.93	Os01g0558800	AK068120.1	-	Conserved hypothetical protein	8e-1	At5g19300	-	O.I.	H.G.	S.X.
0.23	21.2	0.93	Os02g0751600	AK072946.1	-	Peptidylprolyl isomerase, FKBP-type domaincontaining protein	4e-2	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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