CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0222900

Gene name
Homology with Arabidopsis Similar to At3g52720: ACA1 (ALPHA CARBONIC ANHYDRASE 1) (HF=3e+0)

Module size 6 genes

NF 0.56

%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.90 Os07g0222900 CB645570 - KDPG and KHG aldolase family protein 3e+0 At3g52720 ACA1 (ALPHA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.59 78.0 0.92 Os07g0510100 AK066776.1 - Methionine aminopeptidase-like protein 3e-19 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.53 71.3 0.90 Os11g0544000 AK066017.1 - - 7e-2 At1g19990 unknown protein O.I. H.G. S.X.
0.50 68.0 0.94 Os01g0306800 AK099426.1 - Conserved hypothetical protein 9e-1 At5g42370 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0829000 AK065327.1 - Conserved hypothetical protein 7e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.27 27.5 0.93 Os03g0736400 AK105812.1 - Conserved hypothetical protein 95 family protein 1e-24 At3g28460 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.90	Os07g0222900	CB645570	-	KDPG and KHG aldolase family protein	3e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.
0.59	78.0	0.92	Os07g0510100	AK066776.1	-	Methionine aminopeptidase-like protein	3e-19	At1g13270	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	O.I.	H.G.	S.X.
0.53	71.3	0.90	Os11g0544000	AK066017.1	-	-	7e-2	At1g19990	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.94	Os01g0306800	AK099426.1	-	Conserved hypothetical protein	9e-1	At5g42370	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os01g0829000	AK065327.1	-	Conserved hypothetical protein	7e-1	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.27	27.5	0.93	Os03g0736400	AK105812.1	-	Conserved hypothetical protein 95 family protein	1e-24	At3g28460	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
41.1	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.9	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.8	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9	98.1	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377083	Genomic DNA - 45 day old leaf sample - mutant g6989	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1607149_at, orthologous to the query gene, Os07g0222900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.90 95.6 1607149_at At3g52720 hypothetical protein LOC100254127 - 4e-114 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) O.I. H.G. S.X.
0.56 79.4 1616901_at At3g52720 hypothetical protein LOC100261124 - 2e-50 At5g14040 mitochondrial phosphate transporter O.I. H.G. S.X.
0.47 67.7 1610712_s_at At3g52720 hypothetical protein LOC100261124 - 3e-1 At1g30475 - O.I. H.G. S.X.
0.45 64.6 1609729_at At3g52720 hypothetical protein LOC100244928 - 2e+0 At5g04620 ATBIOF (BIOTIN F) O.I. H.G. S.X.
0.44 64.1 1617576_at At3g52720 - - 6e-4 At4g15955 epoxide hydrolase-related O.I. H.G. S.X.
0.43 61.5 1612654_at At3g52720 hypothetical protein LOC100256926 - 3e-19 At5g55290 ATP synthase subunit H family protein O.I. H.G. S.X.
0.42 60.1 1620313_at At3g52720 - - 2e-5 At3g48850 mitochondrial phosphate transporter, putative O.I. H.G. S.X.
0.41 58.7 1606973_at At3g52720 hypothetical protein LOC100247848 - 6e+0 At5g10320 unknown protein O.I. H.G. S.X.
0.40 57.7 1608740_at At3g52720 hypothetical protein LOC100260208 - 1e-13 At4g27090 60S ribosomal protein L14 (RPL14B) O.I. H.G. S.X.
0.39 54.9 1608220_at At3g52720 hypothetical protein LOC100246826 - 1e-9 At5g59410 - O.I. H.G. S.X.
0.38 53.6 1619543_at At3g52720 hypothetical protein LOC100256809 - 3e-1 At1g14770 protein binding / zinc ion binding O.I. H.G. S.X.
0.37 51.7 1620862_at At3g52720 - - 3e-1 At2g36700 pectinesterase family protein O.I. H.G. S.X.
0.36 50.7 1622032_at At3g52720 hypothetical protein LOC100261603 - 8e-5 At3g49320 - O.I. H.G. S.X.
0.36 50.7 1609432_at At3g52720 similar to sec61beta family protein - 8e-23 At3g60540 sec61beta family protein O.I. H.G. S.X.
0.36 50.7 1615480_at At3g52720 hypothetical protein LOC100247007 - 2e-6 At4g26210 mitochondrial ATP synthase g subunit family protein O.I. H.G. S.X.
0.33 45.7 1614428_at At3g52720 hypothetical protein LOC100266723 - 4e-135 At4g23100 GSH1 (GLUTAMATE-CYSTEINE LIGASE) O.I. H.G. S.X.
0.33 45.7 1618984_at At3g52720 hypothetical protein LOC100266739 - 9e-8 At1g77350 unknown protein O.I. H.G. S.X.
0.33 45.7 1614924_at At3g52720 - - 1e-20 At4g21570 unknown protein O.I. H.G. S.X.
0.32 43.1 1619106_at At3g52720 - - 4e-23 At3g26618 ERF1-3 (eukaryotic release factor 1-3) O.I. H.G. S.X.
0.32 43.1 1620441_s_at At3g52720 similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) - 3e-85 At4g34720 AVA-P1 O.I. H.G. S.X.
0.31 41.3 1616757_at At3g52720 mitochondrial cytochrome c - 2e-46 At4g10040 CYTC-2 (cytochrome c-2) O.I. H.G. S.X.
0.30 39.4 1618946_at At3g52720 hypothetical protein LOC100247396 - 2e+0 At1g47290 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) O.I. H.G. S.X.
0.29 37.7 1620932_at At3g52720 hypothetical protein LOC100259549 - 8e-28 At5g26980 SYP41 (SYNTAXIN OF PLANTS 41) O.I. H.G. S.X.
0.28 37.7 1609910_at At3g52720 hypothetical protein LOC100243244 - 2e-2 At1g47970 unknown protein O.I. H.G. S.X.
0.28 37.7 1615323_a_at At3g52720 hypothetical protein LOC100250458 /// hypothetical protein LOC100248672 /// hypothetical protein LOC100258262 - 6e-91 At1g29310 P-P-bond-hydrolysis-driven protein transmembrane transporter O.I. H.G. S.X.
0.22 25.6 1609431_at At3g52720 hypothetical protein LOC100244166 - 3e-4 At5g18790 ribosomal protein L33 family protein O.I. H.G. S.X.
0.15 15.6 1611419_at At3g52720 hypothetical protein LOC100242358 - 2e-9 At4g29130 HXK1 (HEXOKINASE 1) O.I. H.G. S.X.
0.14 14.4 1619912_at At3g52720 hypothetical protein LOC100248672 /// hypothetical protein LOC100258262 - 6e-91 At1g29310 P-P-bond-hydrolysis-driven protein transmembrane transporter O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.90	95.6	1607149_at	At3g52720	hypothetical protein LOC100254127	-	4e-114	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	O.I.	H.G.	S.X.
0.56	79.4	1616901_at	At3g52720	hypothetical protein LOC100261124	-	2e-50	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.
0.47	67.7	1610712_s_at	At3g52720	hypothetical protein LOC100261124	-	3e-1	At1g30475	-	O.I.	H.G.	S.X.
0.45	64.6	1609729_at	At3g52720	hypothetical protein LOC100244928	-	2e+0	At5g04620	ATBIOF (BIOTIN F)	O.I.	H.G.	S.X.
0.44	64.1	1617576_at	At3g52720	-	-	6e-4	At4g15955	epoxide hydrolase-related	O.I.	H.G.	S.X.
0.43	61.5	1612654_at	At3g52720	hypothetical protein LOC100256926	-	3e-19	At5g55290	ATP synthase subunit H family protein	O.I.	H.G.	S.X.
0.42	60.1	1620313_at	At3g52720	-	-	2e-5	At3g48850	mitochondrial phosphate transporter, putative	O.I.	H.G.	S.X.
0.41	58.7	1606973_at	At3g52720	hypothetical protein LOC100247848	-	6e+0	At5g10320	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	1608740_at	At3g52720	hypothetical protein LOC100260208	-	1e-13	At4g27090	60S ribosomal protein L14 (RPL14B)	O.I.	H.G.	S.X.
0.39	54.9	1608220_at	At3g52720	hypothetical protein LOC100246826	-	1e-9	At5g59410	-	O.I.	H.G.	S.X.
0.38	53.6	1619543_at	At3g52720	hypothetical protein LOC100256809	-	3e-1	At1g14770	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.37	51.7	1620862_at	At3g52720	-	-	3e-1	At2g36700	pectinesterase family protein	O.I.	H.G.	S.X.
0.36	50.7	1622032_at	At3g52720	hypothetical protein LOC100261603	-	8e-5	At3g49320	-	O.I.	H.G.	S.X.
0.36	50.7	1609432_at	At3g52720	similar to sec61beta family protein	-	8e-23	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.
0.36	50.7	1615480_at	At3g52720	hypothetical protein LOC100247007	-	2e-6	At4g26210	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.
0.33	45.7	1614428_at	At3g52720	hypothetical protein LOC100266723	-	4e-135	At4g23100	GSH1 (GLUTAMATE-CYSTEINE LIGASE)	O.I.	H.G.	S.X.
0.33	45.7	1618984_at	At3g52720	hypothetical protein LOC100266739	-	9e-8	At1g77350	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	1614924_at	At3g52720	-	-	1e-20	At4g21570	unknown protein	O.I.	H.G.	S.X.
0.32	43.1	1619106_at	At3g52720	-	-	4e-23	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	O.I.	H.G.	S.X.
0.32	43.1	1620441_s_at	At3g52720	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	3e-85	At4g34720	AVA-P1	O.I.	H.G.	S.X.
0.31	41.3	1616757_at	At3g52720	mitochondrial cytochrome c	-	2e-46	At4g10040	CYTC-2 (cytochrome c-2)	O.I.	H.G.	S.X.
0.30	39.4	1618946_at	At3g52720	hypothetical protein LOC100247396	-	2e+0	At1g47290	AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)	O.I.	H.G.	S.X.
0.29	37.7	1620932_at	At3g52720	hypothetical protein LOC100259549	-	8e-28	At5g26980	SYP41 (SYNTAXIN OF PLANTS 41)	O.I.	H.G.	S.X.
0.28	37.7	1609910_at	At3g52720	hypothetical protein LOC100243244	-	2e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.
0.28	37.7	1615323_a_at	At3g52720	hypothetical protein LOC100250458 /// hypothetical protein LOC100248672 /// hypothetical protein LOC100258262	-	6e-91	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	O.I.	H.G.	S.X.
0.22	25.6	1609431_at	At3g52720	hypothetical protein LOC100244166	-	3e-4	At5g18790	ribosomal protein L33 family protein	O.I.	H.G.	S.X.
0.15	15.6	1611419_at	At3g52720	hypothetical protein LOC100242358	-	2e-9	At4g29130	HXK1 (HEXOKINASE 1)	O.I.	H.G.	S.X.
0.14	14.4	1619912_at	At3g52720	hypothetical protein LOC100248672 /// hypothetical protein LOC100258262	-	6e-91	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	Os07g0222900
Gene name
Homology with Arabidopsis	Similar to At3g52720: ACA1 (ALPHA CARBONIC ANHYDRASE 1) (HF=3e+0)
Module size	6 genes
NF	0.56
%ile	75.2

Co-expression analysis

Gene ID Os07g0222900 Gene name Homology with ArabidopsisSimilar to At3g52720: ACA1 (ALPHA CARBONIC ANHYDRASE 1) (HF=3e+0) Module size 6 genes NF 0.56 %ile 75.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID Os07g0222900

Gene name
Homology with Arabidopsis Similar to At3g52720: ACA1 (ALPHA CARBONIC ANHYDRASE 1) (HF=3e+0)

Module size 6 genes

NF 0.56

%ile 75.2

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays