Co-expression analysis

Gene ID Os07g0216100
Gene name
Homology with ArabidopsisSimilar to At5g66490: unknown protein (HF=9e-2)
Module size 6 genes
NF 0.31
%ile 33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.96Os07g0216100AK107820.1-Hypothetical protein9e-2At5g66490unknown proteinO.I.H.G.S.X.
0.4660.90.95Os09g0110500AK069507.1-Hypothetical protein2e+0At2g19300unknown proteinO.I.H.G.S.X.
0.4660.90.96Os09g04623009637.m02532-Esterase/lipase/thioesterase domain containingprotein3e+0At5g1620050S ribosomal protein-relatedO.I.H.G.S.X.
0.3745.00.96Os01g0176700AK109808.1-Myb, DNA-binding domain containing protein1e-12At2g03500myb family transcription factorO.I.H.G.S.X.
0.2117.90.96Os09g04335009637.m02294-Glycosyl transferase, family 31 protein5e-1At3g29300unknown proteinO.I.H.G.S.X.
0.116.50.96Os01g0710200NM_191697.1-Amine oxidase family protein3e+0At4g33660unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.698.5GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.098.0GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.098.0GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.497.9GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM159173Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
8.697.8GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
7.997.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.997.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.7343.1.S1_at, orthologous to the query gene, Os07g0216100

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6481.7Zm.7343.1.S1_atAt5g66490alpha globulin-6e-1At5g05230ubiquitin-protein ligaseO.I.H.G.S.X.
0.4251.3Zm.9052.1.A1_atAt5g66490hypothetical protein LOC100274850-2e+0At5g19080zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4251.3Zm.961.1.A1_atAt5g66490LAP4 protein-2e+0At2g02370-O.I.H.G.S.X.
0.4048.5Zm.10453.1.S1_atAt5g66490--2e+1At5g07510GRP14O.I.H.G.S.X.
0.3844.2Zm.13310.1.S1_atAt5g66490--2e-5At1g65660SMP1 (SWELLMAP 1)O.I.H.G.S.X.
0.3233.4Zm.4800.1.A1_atAt5g66490glucose-6-phosphate isomerase-1e-40At4g24620PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)O.I.H.G.S.X.
0.3131.6Zm.224.1.S1_atAt5g66490outer cell layer1-1e-7At4g00730ANL2 (ANTHOCYANINLESS 2)O.I.H.G.S.X.
0.2724.6Zm.2836.1.A1_atAt5g66490--5e+0At2g30280unknown proteinO.I.H.G.S.X.
0.2724.6Zm.18669.1.A1_atAt5g66490hypothetical protein LOC100273322-3e-4At5g50840-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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