CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0216100

Gene name
Homology with Arabidopsis Similar to At5g66490: unknown protein (HF=9e-2)

Module size 6 genes

NF 0.31

%ile 33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.96 Os07g0216100 AK107820.1 - Hypothetical protein 9e-2 At5g66490 unknown protein O.I. H.G. S.X.
0.46 60.9 0.95 Os09g0110500 AK069507.1 - Hypothetical protein 2e+0 At2g19300 unknown protein O.I. H.G. S.X.
0.46 60.9 0.96 Os09g0462300 9637.m02532 - Esterase/lipase/thioesterase domain containingprotein 3e+0 At5g16200 50S ribosomal protein-related O.I. H.G. S.X.
0.37 45.0 0.96 Os01g0176700 AK109808.1 - Myb, DNA-binding domain containing protein 1e-12 At2g03500 myb family transcription factor O.I. H.G. S.X.
0.21 17.9 0.96 Os09g0433500 9637.m02294 - Glycosyl transferase, family 31 protein 5e-1 At3g29300 unknown protein O.I. H.G. S.X.
0.11 6.5 0.96 Os01g0710200 NM_191697.1 - Amine oxidase family protein 3e+0 At4g33660 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.6 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
10.0 98.0 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
8.6 97.8 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
7.9 97.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.9 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEh0081E03r2_at, orthologous to the query gene, Os07g0216100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 HVSMEh0081E03r2_at At5g66490 - - 2e-23 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) O.I. H.G. S.X.
0.22 24.2 HV09L12u_at At5g66490 - - 4e+0 At2g29870 major intrinsic family protein / MIP family protein O.I. H.G. S.X.
0.04 3.4 Contig8013_at At5g66490 - - 4e-12 At1g54390 PHD finger protein-related O.I. H.G. S.X.
0.03 2.6 Contig17345_at At5g66490 - - 6e-3 At2g20750 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) O.I. H.G. S.X.
0.02 1.8 Contig22182_at At5g66490 - - 4e-1 At1g55805 BolA-like family protein O.I. H.G. S.X.
0.01 1.1 Contig1068_at At5g66490 - - 2e-4 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage