Co-expression analysis

Gene ID Os07g0216100
Gene name
Homology with ArabidopsisSimilar to At5g66490: unknown protein (HF=9e-2)
Module size 6 genes
NF 0.31
%ile 33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.96Os07g0216100AK107820.1-Hypothetical protein9e-2At5g66490unknown proteinO.I.H.G.S.X.
0.4660.90.95Os09g0110500AK069507.1-Hypothetical protein2e+0At2g19300unknown proteinO.I.H.G.S.X.
0.4660.90.96Os09g04623009637.m02532-Esterase/lipase/thioesterase domain containingprotein3e+0At5g1620050S ribosomal protein-relatedO.I.H.G.S.X.
0.3745.00.96Os01g0176700AK109808.1-Myb, DNA-binding domain containing protein1e-12At2g03500myb family transcription factorO.I.H.G.S.X.
0.2117.90.96Os09g04335009637.m02294-Glycosyl transferase, family 31 protein5e-1At3g29300unknown proteinO.I.H.G.S.X.
0.116.50.96Os01g0710200NM_191697.1-Amine oxidase family protein3e+0At4g33660unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.698.5GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.098.0GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.098.0GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.497.9GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM159173Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
8.697.8GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
7.997.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.997.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.20763.1.S1_s_at, orthologous to the query gene, Os07g0216100

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6GmaAffx.20763.1.S1_s_atAt5g66490--3e+0At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.2126.6GmaAffx.86770.1.S1_atAt5g66490--5e-15At1g4500026S proteasome regulatory complex subunit p42D, putativeO.I.H.G.S.X.
0.1721.2GmaAffx.87490.1.S1_atAt5g66490--1e+0At3g23635RTFL13 (ROTUNDIFOLIA LIKE 13)O.I.H.G.S.X.
0.1215.1Gma.9706.3.S1_x_atAt5g66490--2e-5At2g39840TOPP4O.I.H.G.S.X.
0.1114.2GmaAffx.93620.1.S1_s_atAt5g66490--3e-19At3g61140FUS6 (FUSCA 6)O.I.H.G.S.X.
0.069.0GmaAffx.60624.1.S1_atAt5g66490--4e+0At5g09450pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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