CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0196200

Gene name
Homology with Arabidopsis Similar to At4g23890: unknown protein (HF=1e-1)

Module size 7 genes

NF 0.33

%ile 36.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.93 Os07g0196200 AK070765.1 - Conserved hypothetical protein 1e-1 At4g23890 unknown protein O.I. H.G. S.X.
0.50 68.0 0.93 Os08g0101700 AK061172.1 - Cytochrome b561 1e-1 At1g13930 - O.I. H.G. S.X.
0.48 63.7 0.93 Os01g0734600 AK103129.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-3 At1g70470 unknown protein O.I. H.G. S.X.
0.43 55.4 0.96 Os10g0530500 AF402800.1 - Glutathione S-transferase, C-terminal domaincontaining protein 1e-1 At3g09270 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) O.I. H.G. S.X.
0.36 44.0 0.95 Os09g0460400 AK067180.1 - Esterase/lipase/thioesterase domain containingprotein 9e+0 At5g06570 hydrolase O.I. H.G. S.X.
0.20 16.5 0.94 Os02g0556800 AK100187.1 - Conserved hypothetical protein 3e-2 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.17 12.6 0.94 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.5 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.6 97.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.8 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.8 96.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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