CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0193000

Gene name
Homology with Arabidopsis Similar to At5g62630: HIPL2 (HIPL2 PROTEIN PRECURSOR) (HF=3e-1)

Module size 6 genes

NF 0.58

%ile 78.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.93 Os07g0193000 9635.m00915 - HIPL1 protein precursor 3e-1 At5g62630 HIPL2 (HIPL2 PROTEIN PRECURSOR) O.I. H.G. S.X.
0.67 87.2 0.93 Os04g0684300 AK105205.1 - Hypothetical protein 2e+1 Atcg00560 - O.I. H.G. S.X.
0.60 79.7 0.93 Os04g0423800 AK108989.1 - Peroxidase precursor (EC 1.11.1.7) 3e-3 At1g44970 peroxidase, putative O.I. H.G. S.X.
0.50 68.0 0.93 Os03g0245500 AK064707.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 1e+1 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) O.I. H.G. S.X.
0.44 58.1 0.92 Os08g0245200 AK069932.1 - 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) 3e-10 At3g21240 4CL2 (4-COUMARATE:COA LIGASE 2) O.I. H.G. S.X.
0.23 21.2 0.92 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.6 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
9.9 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.022 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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