Co-expression analysis

Gene ID Os07g0179300
Gene name
Homology with ArabidopsisSimilar to At3g63410: APG1 (ALBINO OR PALE GREEN MUTANT 1) (HF=3e-18)
Module size 6 genes
NF 0.41
%ile 50.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.86Os07g01793009635.m00769-UbiE/COQ5 methyltransferase family protein3e-18At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)O.I.H.G.S.X.
0.4660.90.88Os02g08274009630.m05797-Protein of unknown function DUF789 family protein1e-1At1g15030-O.I.H.G.S.X.
0.4458.10.90Os07g04642009635.m02713-O-methyltransferase, family 2 domain containingprotein8e+0At1g26800zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2931.10.86Os08g01879009636.m00838-Conserved hypothetical protein4e-1At4g19270unknown proteinO.I.H.G.S.X.
0.2625.60.86Os03g0176700CB617853-Hypothetical protein3e+0At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.2524.10.90Os01g0574700NM_193609.1--3e-3At5g01410RSR4 (REDUCED SUGAR RESPONSE 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.599.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
21.599.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.998.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.198.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.698.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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