CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0166700

Gene name
Homology with Arabidopsis Similar to At1g09483: unknown protein (HF=4e-1)

Module size 7 genes

NF 0.43

%ile 53.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.88 Os07g0166700 AY332473.1 - Protein kinase domain containing protein 4e-1 At1g09483 unknown protein O.I. H.G. S.X.
0.67 87.2 0.89 Os09g0450600 9637.m02442 - TB2/DP1 and HVA22 related protein family protein 4e+0 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.42 53.9 0.88 Os03g0135200 AK059226.1 - Glutathione S-transferase GST 9 (EC 2.5.1.18) 2e+0 At4g10090 unknown protein O.I. H.G. S.X.
0.40 51.1 0.89 Os04g0447600 AK061282.1 - NADPH-dependent codeinone reductase (EC 1.1.1.247) 2e-1 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.29 31.1 0.88 Os07g0159700 9635.m00597 - Protein kinase domain containing protein 3e-2 At3g17420 GPK1 O.I. H.G. S.X.
0.29 31.1 0.89 Os05g0363500 CA757967 - ARM repeat fold domain containing protein 2e+0 At3g23245 unknown protein O.I. H.G. S.X.
0.27 27.5 0.88 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.0 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.1 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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