CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0164300

Gene name
Homology with Arabidopsis Similar to At5g08080: SYP132 (SYNTAXIN OF PLANTS 132) (HF=1e-11)

Module size 19 genes

NF 0.31

%ile 34.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.90 97.1 0.95 Os07g0164300 AK099351.1 - Syntaxin, N-terminal domain containing protein 1e-11 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) O.I. H.G. S.X.
0.49 64.4 0.96 Os06g0128200 AK059076.1 - LMBR1-like conserved region domain containingprotein 6e-55 At5g01460 LMBR1 integral membrane family protein O.I. H.G. S.X.
0.46 60.9 0.97 Os05g0474400 AK060006.1 - - 6e-1 At3g56110 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) O.I. H.G. S.X.
0.44 58.1 0.96 Os02g0653800 9630.m04210 - GTP-binding protein YPTM2 4e-24 At4g17530 ATRAB1C O.I. H.G. S.X.
0.44 58.1 0.98 Os02g0690700 AU030655 - Clathrin adaptor complex, medium chain familyprotein 3e+0 At1g19770 ATPUP14 O.I. H.G. S.X.
0.42 53.9 0.96 Os06g0731800 AU184473 - Conserved hypothetical protein 1e+0 At1g56330 ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) O.I. H.G. S.X.
0.31 34.5 0.97 Os06g0618600 AK060212.1 - Conserved hypothetical protein 8e-8 At1g50120 - O.I. H.G. S.X.
0.31 34.5 0.96 Os03g0823700 AK061336.1 - Ras-related protein Rab11C 1e-42 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) O.I. H.G. S.X.
0.30 32.7 0.96 Os03g0265700 AK068453.1 - SH3 domain containing protein 6e-50 At2g07360 SH3 domain-containing protein O.I. H.G. S.X.
0.30 32.7 0.97 Os03g0804300 AK067295.1 - Huntingtin-interacting protein 14 6e-14 At3g60800 zinc finger (DHHC type) family protein O.I. H.G. S.X.
0.29 31.1 0.97 Os12g0207300 AF443601.1 - Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain) 9e-55 At1g47830 clathrin coat assembly protein, putative O.I. H.G. S.X.
0.27 27.5 0.97 Os08g0430500 AK061786.1 - 14-3-3-like protein GF14 nu (General regulatoryfactor 7) 6e-33 At5g16050 GRF5 (GENERAL REGULATORY FACTOR 5) O.I. H.G. S.X.
0.26 25.6 0.96 Os08g0117400 AK059891.1 - Calmodulin 1 (Fragment) 2e-9 At1g12310 calmodulin, putative O.I. H.G. S.X.
0.24 22.4 0.97 Os05g0556100 AK065908.1 - SDL5A 1e-43 At3g61760 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) O.I. H.G. S.X.
0.23 21.2 0.96 Os01g0254200 AK121256.1 - Conserved hypothetical protein 3e-1 At5g08391 unknown protein O.I. H.G. S.X.
0.23 21.2 0.98 Os07g0194000 AK060910.1 - Vesicle-associated membrane protein 721(AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B) 6e-35 At1g04750 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) O.I. H.G. S.X.
0.22 19.4 0.96 Os12g0595000 AK065252.1 - EXS, C-terminal domain containing protein 3e-13 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein O.I. H.G. S.X.
0.19 15.1 0.97 Os12g0407500 AK100320.1 - Tyrosine specific protein phosphatase and dualspecificity protein phosphatase family protein 3e-84 At3g19420 ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) O.I. H.G. S.X.
0.11 6.5 0.96 Os05g0187000 AB026564.1 - 20S proteasome beta2 subunit 1e-23 At5g40580 PBB2 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.7 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.090 5 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
0.059 2 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.055 2 GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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