Co-expression analysis

Gene ID	Os07g0162100
Gene name
Homology with Arabidopsis	Similar to At5g42635: glycine-rich protein (HF=2e+0)
Module size	6 genes
NF	0.50
%ile	66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	77.0	0.92	Os07g0162100	9635.m00620	-	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminaldomain containing protein	2e+0	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	0.92	Os07g0425000	AK108531.1	-	Conserved hypothetical protein	6e-1	At3g28740	CYP81D1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	0.92	Os01g0175700	CB624018	-	HCO3-transporter domain containing protein	2e-5	At1g15460	BOR4 (REQUIRES HIGH BORON 4)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	0.93	Os01g0823600	CF305219	-	Conserved hypothetical protein	1e+0	At5g06760	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	0.93	Os04g0668800	AY224471.1	-	Putative thiol-disulphide oxidoreductase DCCfamily protein	1e-7	At5g50100	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	0.93	Os03g0228200	9631.m01196	-	Conserved hypothetical protein	2e-2	At2g23790	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.9	99.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5	99.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5	98.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.9	98.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM195222	Ovary 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
14.2	98.5	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM195221	Ovary 1, biological rep 1	GSE7951	Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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