CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0154100

Gene name
Homology with Arabidopsis Similar to At3g14440: NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) (HF=3e-4)

Module size 6 genes

NF 0.63

%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.83 Os07g0154100 AK119780.1 - The start codon is not identified. 3e-4 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) O.I. H.G. S.X.
0.67 87.2 0.83 Os07g0687900 D26537.1 - WSI76 protein induced by water stress 4e-24 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) O.I. H.G. S.X.
0.63 82.7 0.78 Os01g0121600 BI807193 - Conserved hypothetical protein 2e+0 At2g32890 RALFL17 (RALF-LIKE 17) O.I. H.G. S.X.
0.63 82.7 0.81 Os09g0325700 AK063334.1 - Protein phosphatase 2C (EC 3.1.3.16) (PP2C) 7e-1 At5g06210 RNA-binding protein, putative O.I. H.G. S.X.
0.46 60.9 0.85 Os12g0478200 AK063578.1 - GRAM domain containing protein 4e-4 At5g23360 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.
0.40 51.1 0.83 Os03g0125100 9631.m00248 - Beta-carotene hydroxylase 1e-11 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 97.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.8 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
7.3 97.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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