CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0144900

Gene name
Homology with Arabidopsis Similar to At3g60010: ASK13 (ARABIDOPSIS SKP1-LIKE 13) (HF=3e-1)

Module size 33 genes

NF 0.45

%ile 57.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 96.0 0.97 Os07g0144900 9635.m00449 - Skp1 (Fragment) 3e-1 At3g60010 ASK13 (ARABIDOPSIS SKP1-LIKE 13) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0219000 9631.m01114 - - 6e+0 At4g14819 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os09g0112900 9637.m00095 - - 4e+0 At2g18830 - O.I. H.G. S.X.
0.61 81.2 0.99 Os09g0413800 9631.m05442 - - 6e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.59 78.0 0.98 Os02g0239700 9630.m01340 - - 2e-2 At3g26350 - O.I. H.G. S.X.
0.59 78.0 0.98 Os05g0167300 9633.m00669 - - 4e+0 At5g03710 unknown protein O.I. H.G. S.X.
0.56 76.3 0.98 Os06g0352300 9634.m02424 - - 1e+0 At4g33640 unknown protein O.I. H.G. S.X.
0.56 76.3 0.98 Os11g0638200 AY224587.1 - Hypothetical protein 8e-1 At1g18800 NRP2 (NAP1-RELATED PROTEIN 2) O.I. H.G. S.X.
0.56 76.3 0.99 Os02g0655000 9639.m04465 - - 2e-1 At3g04640 glycine-rich protein O.I. H.G. S.X.
0.54 71.9 0.98 Os04g0188200 9632.m00975 - - 4e-1 At5g06270 unknown protein O.I. H.G. S.X.
0.54 71.9 0.98 Os04g0246100 9632.m01554 - - 1e+1 At5g13890 unknown protein O.I. H.G. S.X.
0.53 71.3 0.98 Os11g0539300 NM_189860.1 - - 3e-1 At5g44610 MAP18 (Microtubule-associated Protein 18) O.I. H.G. S.X.
0.53 71.3 0.98 Os03g0790400 9631.m05657 - - 3e+0 At2g36210 auxin-responsive family protein O.I. H.G. S.X.
0.52 69.6 0.98 Os12g0135700 AK101030.1 - - 3e-3 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. H.G. S.X.
0.52 69.6 0.99 Os10g0386500 9638.m02076 - - 1e-1 At5g53920 ribosomal protein L11 methyltransferase-related O.I. H.G. S.X.
0.47 62.3 0.99 Os10g0351600 9638.m01756 - Tapetum specific protein (Tapetum-specificendoxylanase) 4e-3 At4g38300 glycosyl hydrolase family 10 protein O.I. H.G. S.X.
0.47 62.3 0.98 Os01g0842100 NM_190550.1 - - 3e+0 At3g05490 RALFL22 (ralf-like 22) O.I. H.G. S.X.
0.47 62.3 0.98 Os10g0514500 9638.m03307 - Cytochrome P450 family protein 8e-1 At1g64930 CYP89A7 O.I. H.G. S.X.
0.42 53.9 0.98 Os05g0384600 AK111176.1 - ABC transporter related domain containing protein 9e-5 At5g19410 ABC transporter family protein O.I. H.G. S.X.
0.42 53.9 0.98 Os04g0533700 9632.m04337 - - 2e+0 At3g53880 aldo/keto reductase family protein O.I. H.G. S.X.
0.41 52.4 0.99 Os06g0545100 9634.m03339 - - 4e+0 At1g14225 unknown protein O.I. H.G. S.X.
0.40 51.1 0.98 Os02g0460100 9630.m02467 - - 6e+0 At5g03840 TFL1 (TERMINAL FLOWER 1) O.I. H.G. S.X.
0.39 48.3 0.99 Os03g0583700 9631.m03715 - Proteasome maturation factor UMP1 family protein 4e-1 At4g10880 unknown protein O.I. H.G. S.X.
0.39 48.3 0.99 Os12g0273800 9640.m01719 - Cysteine proteinase 5e-1 At1g29090 peptidase C1A papain family protein O.I. H.G. S.X.
0.38 46.9 0.98 Os01g0794500 NM_190884.1 - Protein translation factor SUI1 homolog (GOS2protein) 8e-1 At4g30300 ATNAP15 O.I. H.G. S.X.
0.37 45.0 0.98 Os03g0136966 9631.m00355 - - 4e+0 At5g43175 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.37 45.0 0.98 Os02g0477600 9630.m02624 - - 8e-1 At5g05090 myb family transcription factor O.I. H.G. S.X.
0.36 44.0 0.98 Os01g0288301 NM_183574.1 - - 3e+0 At5g26720 unknown protein O.I. H.G. S.X.
0.35 41.7 0.98 Os07g0165300 9635.m00651 - - 2e-3 At1g31070 UDP-N-acetylglucosamine pyrophosphorylase-related O.I. H.G. S.X.
0.34 40.0 0.98 Os08g0482901 NM_191161.1 - - 1e-1 At3g07120 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 38.8 0.98 Os04g0643500 9632.m05354 - 2OG-Fe(II) oxygenase superfamily protein 2e+0 At5g40860 unknown protein O.I. H.G. S.X.
0.31 34.5 0.98 Os03g0154600 9630.m00084 - - 3e+0 At4g10613 - O.I. H.G. S.X.
0.18 13.7 0.98 Os05g0234400 9633.m01264 - - 1e+0 At1g06380 ribosomal protein-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.84	96.0	0.97	Os07g0144900	9635.m00449	-	Skp1 (Fragment)	3e-1	At3g60010	ASK13 (ARABIDOPSIS SKP1-LIKE 13)	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os03g0219000	9631.m01114	-	-	6e+0	At4g14819	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.99	Os09g0112900	9637.m00095	-	-	4e+0	At2g18830	-	O.I.	H.G.	S.X.
0.61	81.2	0.99	Os09g0413800	9631.m05442	-	-	6e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.59	78.0	0.98	Os02g0239700	9630.m01340	-	-	2e-2	At3g26350	-	O.I.	H.G.	S.X.
0.59	78.0	0.98	Os05g0167300	9633.m00669	-	-	4e+0	At5g03710	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os06g0352300	9634.m02424	-	-	1e+0	At4g33640	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os11g0638200	AY224587.1	-	Hypothetical protein	8e-1	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os02g0655000	9639.m04465	-	-	2e-1	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os04g0188200	9632.m00975	-	-	4e-1	At5g06270	unknown protein	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os04g0246100	9632.m01554	-	-	1e+1	At5g13890	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os11g0539300	NM_189860.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os03g0790400	9631.m05657	-	-	3e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.
0.52	69.6	0.98	Os12g0135700	AK101030.1	-	-	3e-3	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	O.I.	H.G.	S.X.
0.52	69.6	0.99	Os10g0386500	9638.m02076	-	-	1e-1	At5g53920	ribosomal protein L11 methyltransferase-related	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os10g0351600	9638.m01756	-	Tapetum specific protein (Tapetum-specificendoxylanase)	4e-3	At4g38300	glycosyl hydrolase family 10 protein	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os01g0842100	NM_190550.1	-	-	3e+0	At3g05490	RALFL22 (ralf-like 22)	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os10g0514500	9638.m03307	-	Cytochrome P450 family protein	8e-1	At1g64930	CYP89A7	O.I.	H.G.	S.X.
0.42	53.9	0.98	Os05g0384600	AK111176.1	-	ABC transporter related domain containing protein	9e-5	At5g19410	ABC transporter family protein	O.I.	H.G.	S.X.
0.42	53.9	0.98	Os04g0533700	9632.m04337	-	-	2e+0	At3g53880	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.41	52.4	0.99	Os06g0545100	9634.m03339	-	-	4e+0	At1g14225	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os02g0460100	9630.m02467	-	-	6e+0	At5g03840	TFL1 (TERMINAL FLOWER 1)	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os03g0583700	9631.m03715	-	Proteasome maturation factor UMP1 family protein	4e-1	At4g10880	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os12g0273800	9640.m01719	-	Cysteine proteinase	5e-1	At1g29090	peptidase C1A papain family protein	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os01g0794500	NM_190884.1	-	Protein translation factor SUI1 homolog (GOS2protein)	8e-1	At4g30300	ATNAP15	O.I.	H.G.	S.X.
0.37	45.0	0.98	Os03g0136966	9631.m00355	-	-	4e+0	At5g43175	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.37	45.0	0.98	Os02g0477600	9630.m02624	-	-	8e-1	At5g05090	myb family transcription factor	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os01g0288301	NM_183574.1	-	-	3e+0	At5g26720	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.98	Os07g0165300	9635.m00651	-	-	2e-3	At1g31070	UDP-N-acetylglucosamine pyrophosphorylase-related	O.I.	H.G.	S.X.
0.34	40.0	0.98	Os08g0482901	NM_191161.1	-	-	1e-1	At3g07120	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os04g0643500	9632.m05354	-	2OG-Fe(II) oxygenase superfamily protein	2e+0	At5g40860	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os03g0154600	9630.m00084	-	-	3e+0	At4g10613	-	O.I.	H.G.	S.X.
0.18	13.7	0.98	Os05g0234400	9633.m01264	-	-	1e+0	At1g06380	ribosomal protein-related	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.8 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.3 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.0 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
21.8	99.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.1	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7	98.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.3	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.0	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.040 1 GO:0006633 The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
0.033 1 GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.040	1	GO:0006633	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
0.033	1	GO:0006413	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os07g0144900
Gene name
Homology with Arabidopsis	Similar to At3g60010: ASK13 (ARABIDOPSIS SKP1-LIKE 13) (HF=3e-1)
Module size	33 genes
NF	0.45
%ile	57.9

Co-expression analysis

Gene ID Os07g0144900 Gene name Homology with ArabidopsisSimilar to At3g60010: ASK13 (ARABIDOPSIS SKP1-LIKE 13) (HF=3e-1) Module size 33 genes NF 0.45 %ile 57.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os07g0144900

Gene name
Homology with Arabidopsis Similar to At3g60010: ASK13 (ARABIDOPSIS SKP1-LIKE 13) (HF=3e-1)

Module size 33 genes

NF 0.45

%ile 57.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays