CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0127600

Gene name
Homology with Arabidopsis Similar to At3g09590: pathogenesis-related protein, putative (HF=1e-4)

Module size 9 genes

NF 0.34

%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.62 Os07g0127600 AK063248.1 - Allergen V5/Tpx-1 related family protein 1e-4 At3g09590 pathogenesis-related protein, putative O.I. H.G. S.X.
0.36 44.0 0.83 Os07g0127500 AK062949.1 - PR-1a pathogenesis related protein (Hv-1a)precursor 4e-1 At1g31175 unknown protein O.I. H.G. S.X.
0.36 44.0 0.85 Os07g0125000 AK060005.1 - Pathogenesis-related protein PR-1 precursor 1e-4 At3g09590 pathogenesis-related protein, putative O.I. H.G. S.X.
0.33 38.8 0.84 Os07g0448100 NM_187082.1 - Plasma membrane integral protein ZmPIP2-6 9e-30 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) O.I. H.G. S.X.
0.30 32.7 0.91 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein O.I. H.G. S.X.
0.29 31.1 0.89 Os05g0278500 AK067851.1 - Transferase family protein 2e-1 At1g06980 unknown protein O.I. H.G. S.X.
0.25 24.1 0.91 Os01g0291500 AK070443.1 - Transferase family protein 9e-4 At3g62160 transferase family protein O.I. H.G. S.X.
0.22 19.4 0.89 Os12g0183200 9640.m00762 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase) 3e-2 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative O.I. H.G. S.X.
0.20 16.5 0.85 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.8 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.2 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.0 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.9 98.6 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.6 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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