Co-expression analysis

Gene ID	Os07g0125000
Gene name
Homology with Arabidopsis	Similar to At3g09590: pathogenesis-related protein, putative (HF=1e-4)
Module size	6 genes
NF	0.29
%ile	29.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	73.7	0.63	Os07g0125000	AK060005.1	-	Pathogenesis-related protein PR-1 precursor	1e-4	At3g09590	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.66	Os07g0127600	AK063248.1	-	Allergen V5/Tpx-1 related family protein	1e-4	At3g09590	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.83	Os07g0127500	AK062949.1	-	PR-1a pathogenesis related protein (Hv-1a)precursor	4e-1	At1g31175	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.83	Os01g0795000	AF200467.1	-	Subtilisin-like secreted protease	2e-2	At4g10510	subtilase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	0.83	Os03g0306700	AK109929.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	2e-1	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	0.85	Os01g0297200	AK109883.1	-	AAA ATPase, central region domain containingprotein	6e-5	At4g25835	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
47.2	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
30.3	99.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
23.7	99.4	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.2	99.3	GSM262012	Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.1	98.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM262011	Nipponbare, 2 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.8	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.250	1	GO:0043086	Any process that stops or reduces the activity of an enzyme.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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