Co-expression analysis

Gene ID	Os07g0122000
Gene name
Homology with Arabidopsis	Similar to At2g06200: AtGRF6 (GROWTH-REGULATING FACTOR 6) (HF=1e+0)
Module size	6 genes
NF	0.03
%ile	1.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	68.0	0.60	Os07g0122000	AK102508.1	-	Conserved hypothetical protein	1e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.56	Os04g0171600	AK100766.1	-	Cytochrome P450 79A1 (EC 1.14.13.41) (TyrosineN-monooxygenase) (Cytochrome P450Tyr)	2e-4	At1g79370	CYP79C1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.60	Os12g0117700	AK107752.1	-	Hypothetical protein	2e-1	At1g21560	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	0.61	Os03g0115800	AU222487	-	Conserved hypothetical protein	3e+0	At5g44420	PDF1.2	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	0.60	Os02g0615500	AK100073.1	-	Protein kinase domain containing protein	1e-1	At2g01918	calcium ion binding	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
-	0.1	0.59	Os09g0304800	CB681576	-	Conserved hypothetical protein	2e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
54.2	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.8	99.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
20.8	99.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5	99.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.6	98.9	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
16.5	98.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM195220	stigma 3, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
16.1	98.7	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
14.6	98.6	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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