Co-expression analysis

Gene ID Os07g0109500
Gene name
Homology with ArabidopsisSimilar to At3g07110: 60S ribosomal protein L13A (RPL13aA) (HF=1e-16)
Module size 10 genes
NF 0.16
%ile 13.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.92Os07g0109500NM_186164.1-Ribosomal protein L13 family protein1e-16At3g0711060S ribosomal protein L13A (RPL13aA)O.I.H.G.S.X.
0.2524.10.94Os12g0556400AK062903.1-Conserved hypothetical protein2e-5At1g16000unknown proteinO.I.H.G.S.X.
0.2321.20.95Os03g0702800AK121869.1-Eukaryotic peptide chain release factor subunit 1(eRF1) (Eukaryotic release factor 1) (TB3-1) (Cl1protein)3e-142At3g26618ERF1-3 (eukaryotic release factor 1-3)O.I.H.G.S.X.
0.2016.50.94Os02g06179009630.m03912-Conserved hypothetical protein9e-1At2g16580auxin-responsive protein, putativeO.I.H.G.S.X.
0.1915.10.95Os03g0324800AK071431.1-Hypothetical protein9e+0At5g47170unknown proteinO.I.H.G.S.X.
0.116.50.95Os12g0285500CA764242-Hypothetical protein1e-7At3g48380-O.I.H.G.S.X.
0.116.50.94Os09g0537600AK061004.1-Cyclophilin B3e-18At4g34960peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.
0.094.90.95Os05g0402800BI118799-ATPase, E1-E2 type family protein1e-11At5g23630ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy proteinO.I.H.G.S.X.
0.084.20.95Os06g0158600AK101378.1-Protein of unknown function DUF652 family protein2e-16At2g46230-O.I.H.G.S.X.
0.073.70.94Os05g0513600CA762213-Conserved hypothetical protein1e-9At3g06320ribosomal protein L33 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.699.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.998.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.998.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.397.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1181GO:0006415The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).Link to AmiGO
0.0231GO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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