Co-expression analysis

Gene ID Os06g0728500
Gene name
Homology with ArabidopsisSimilar to At1g70190: ribosomal protein L12 family protein (HF=2e-2)
Module size 11 genes
NF 0.53
%ile 70.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5371.30.94Os06g0728500AK099928.1-Hypothetical protein2e-2At1g70190ribosomal protein L12 family proteinO.I.H.G.S.X.
0.6483.40.95Os02g0773300AK071811.1-Pyridoxal phosphate-dependent deaminase familyprotein3e-12At1g48420D-CDES (D-CYSTEINE DESULFHYDRASE)O.I.H.G.S.X.
0.6382.70.95Os07g0646300AK066044.1-Conserved hypothetical protein9e-1At3g116302-cys peroxiredoxin, chloroplast (BAS1)O.I.H.G.S.X.
0.6079.70.96Os05g0101200AY262026.1-Peroxisomal membrane anchor protein (Pex14p)domain containing protein1e+0At5g61660glycine-rich proteinO.I.H.G.S.X.
0.5371.30.95Os12g0612100AK101614.1-Hypothetical protein9e-1At5g38290peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.5371.30.95Os06g0320700AK072187.1-Protein of unknown function UPF0061 family protein2e-33At5g13030unknown proteinO.I.H.G.S.X.
0.5371.30.96Os10g0464400AY332469.1-Riboflavin kinase / FAD synthetase family protein3e-22At4g21470ATFMN/FHY (riboflavin kinase/FMN hydrolase)O.I.H.G.S.X.
0.5168.70.95Os01g0104100AK072797.1-The start codon is not identified.1e-2At3g54360protein binding / zinc ion bindingO.I.H.G.S.X.
0.5068.00.95Os02g0125100AK101889.1-Cis-homoaconitase family protein1e-24At4g13430IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)O.I.H.G.S.X.
0.3338.80.95Os02g0201000AK064792.1-Conserved hypothetical protein7e-2At5g25360unknown proteinO.I.H.G.S.X.
0.2524.10.96Os03g0809300AK103140.1-Protein phosphatase 2C-like domain containingprotein1e-3At4g16580catalyticO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.199.7GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.197.7GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.597.2GSM195228EmbryoGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
6.097.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.696.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.196.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.Link to AmiGO
0.1541GO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.Link to AmiGO
0.1541GO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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