Co-expression analysis

Gene ID Os06g0726200
Gene name
Homology with ArabidopsisSimilar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=2e-4)
Module size 6 genes
NF 0.22
%ile 20.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.70Os06g0726200AK061042.1-Endochitinase precursor (EC 3.2.1.14)2e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.6079.70.71Os10g0416500AK059767.1-Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulbchitinase-1) (TBC-1)5e-1At1g21050unknown proteinO.I.H.G.S.X.
0.3644.00.78Os01g0940800AK068247.1-Beta-1,3-glucanase precursor1e-5At5g20560beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.3541.70.70Os06g0493100AY256682.1-Hypothetical protein1e+0At5g38950germin-like protein-relatedO.I.H.G.S.X.
0.2524.10.68Os03g0663500U77656.1-Thaumatin, pathogenesis-related family protein7e+0At3g25400-O.I.H.G.S.X.
0.073.70.65Os12g0555000AB127580.1-Bet v I allergen family protein6e+0At5g64310AGP1 (ARABINOGALACTAN PROTEIN 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.899.3GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.598.3GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
11.998.3GSM375648Taichung 65_shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
11.898.3GSM375647Taichung 65_shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
11.798.2GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
11.498.2GSM375649Taichung 65_shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
10.398.1GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.097.6GSM154959Leaf_OsRR6-overexpressor_replicate 1GSE6720Gene expression in OsRR6-overexpression lineLink to GEO
7.497.5GSM195224Suspension cellGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
7.097.4GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1051GO:0006032The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.Link to AmiGO
0.1051GO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.Link to AmiGO
0.0771GO:0016998The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psHB043xM23f_at, orthologous to the query gene, Os06g0726200

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6PsAffx.psHB043xM23f_atAt3g12500--7e-4At3g50220unknown proteinO.I.H.G.S.X.
0.1215.1PsAffx.C8000052_atAt3g12500--4e-1At2g15280reticulon family protein (RTNLB10)O.I.H.G.S.X.
0.0912.0PsAffx.psZG005xN22f_s_atAt3g12500--9e+0At5g14602unknown proteinO.I.H.G.S.X.
0.035.8GmaAffx.90024.1.S1_atAt3g12500--1e-65At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.013.4GmaAffx.90612.1.S1_atAt3g12500--2e-14At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.
0.001.4GmaAffx.83815.1.S1_s_atAt3g12500--1e+0At1g04330unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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