CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0726100

Gene name
Homology with Arabidopsis Similar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=1e-4)

Module size 7 genes

NF 0.24

%ile 23.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.43 55.4 0.73 Os06g0726100 Z29962.1 - Endochitinase precursor (EC 3.2.1.14) 1e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.36 44.0 0.72 Os06g0726200 AK061042.1 - Endochitinase precursor (EC 3.2.1.14) 2e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.36 44.0 0.75 Os11g0213000 CF330511 - Protein kinase domain containing protein 6e+0 At5g45760 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.32 36.3 0.75 Os10g0322200 AK106038.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 6e-2 At1g22400 UGT85A1 O.I. H.G. S.X.
0.17 12.6 0.71 Os01g0187200 NM_189634.1 - Hypothetical protein 5e-2 At5g19875 unknown protein O.I. H.G. S.X.
0.14 9.3 0.69 Os01g0940800 AK068247.1 - Beta-1,3-glucanase precursor 1e-5 At5g20560 beta-1,3-glucanase, putative O.I. H.G. S.X.
0.13 8.2 0.73 Os01g0609300 AF093586 - PDR-like ABC transporter (PDR3 ABC transporter) 6e-1 At3g18590 plastocyanin-like domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.2 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.0 98.2 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.0 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.7 98.0 GSM421668 XOC, 2 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.7 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 2 GO:0006032 The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
0.200 2 GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
0.148 2 GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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