CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0717200

Gene name
Homology with Arabidopsis Similar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (HF=7e-12)

Module size 8 genes

NF 0.31

%ile 33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.89 Os06g0717200 AK111824.1 - Leucine-rich repeat/receptor protein kinaseprecursor 7e-12 At3g49670 BAM2 (BARELY ANY MERISTEM 2) O.I. H.G. S.X.
0.40 51.1 0.90 Os06g0488600 AK058968.1 - Hypothetical protein 5e-24 At3g27870 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.36 44.0 0.92 Os05g0228400 AK121917.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 8e-8 At2g20100 ethylene-responsive family protein O.I. H.G. S.X.
0.30 32.7 0.90 Os01g0626900 AK071582.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e-4 At1g29951 CPuORF35 (Conserved peptide upstream open reading frame 35) O.I. H.G. S.X.
0.29 31.1 0.91 Os03g0276900 CB665713 - Glycosyl transferase, family 14 protein 3e-1 At4g27480 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.23 21.2 0.90 Os05g0120700 AK062874.1 - Cation transporting ATPase, C-terminal domaincontaining protein 2e-23 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) O.I. H.G. S.X.
0.23 21.2 0.90 Os01g0897600 CA762923 - Glycoside hydrolase, family 1 protein 2e-7 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) O.I. H.G. S.X.
0.20 16.5 0.90 Os03g0797600 AK068388.1 - Helix-loop-helix protein homolog 7e-13 At4g02590 UNE12 (unfertilized embryo sac 12) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.3 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0010080 Any process involved in maintaining the size and shape of a floral meristem.
0.222 1 GO:0048833 Any process that modulates the number of floral organs formed in a floral whorl.
0.054 1 GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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