CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0717100

Gene name
Homology with Arabidopsis Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)

Module size 6 genes

NF 0.31

%ile 33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.91 Os06g0717100 AK071437.1 - Senescence-associated family protein 9e-4 At3g51250 senescence/dehydration-associated protein-related O.I. H.G. S.X.
0.80 94.6 0.92 Os02g0685900 C22384 - Calcium dependent protein kinase 1e-16 At4g38230 CPK26 O.I. H.G. S.X.
0.50 68.0 0.92 Os01g0672800 AK101605.1 - Protein of unknown function DUF1421 family protein 3e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) O.I. H.G. S.X.
0.46 60.9 0.93 Os04g0608900 AK111698.1 - Serine/threonine/tyrosine kinase 3e-10 At4g31170 protein kinase family protein O.I. H.G. S.X.
0.12 7.2 0.93 Os10g0554100 AK071048.1 - Oxysterol-binding protein family protein 8e-36 At2g31030 ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B) O.I. H.G. S.X.
0.11 6.5 0.93 Os05g0585500 AK070346.1 - Calcium-dependent protein kinase 1e-12 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Inter-species module comparison

A co-expression module including the grape gene, 1620878_at, orthologous to the query gene, Os06g0717100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 92.6 1620878_at At3g51250 - - 5e-10 At3g51250 senescence/dehydration-associated protein-related O.I. H.G. S.X.
0.87 95.2 1610244_x_at At3g51250 hypothetical protein LOC100261052 - 1e-3 At4g15000 60S ribosomal protein L27 (RPL27C) O.I. H.G. S.X.
0.80 93.6 1622617_x_at At3g51250 - - 3e-25 At4g34460 AGB1 (GTP BINDING PROTEIN BETA 1) O.I. H.G. S.X.
0.76 91.5 1607051_x_at At3g51250 - - 9e-42 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.72 89.7 1619492_at At3g51250 - - 5e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) O.I. H.G. S.X.
0.70 88.6 1621812_x_at At3g51250 - - 1e-37 At1g27400 60S ribosomal protein L17 (RPL17A) O.I. H.G. S.X.
0.67 87.9 1615840_at At3g51250 - - 2e-36 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.
0.67 87.9 1622150_at At3g51250 - - 1e-37 At1g27400 60S ribosomal protein L17 (RPL17A) O.I. H.G. S.X.
0.67 87.9 1615025_at At3g51250 - - 9e-42 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.63 84.3 1612496_at At3g51250 - - 3e-17 At2g29550 TUB7 O.I. H.G. S.X.
0.63 84.3 1613001_a_at At3g51250 hypothetical protein LOC100266839 - 1e-22 At1g52370 ribosomal protein L22 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage