Co-expression analysis

Gene ID	Os06g0717100
Gene name
Homology with Arabidopsis	Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)
Module size	6 genes
NF	0.31
%ile	33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.7	0.91	Os06g0717100	AK071437.1	-	Senescence-associated family protein	9e-4	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.92	Os02g0685900	C22384	-	Calcium dependent protein kinase	1e-16	At4g38230	CPK26	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.92	Os01g0672800	AK101605.1	-	Protein of unknown function DUF1421 family protein	3e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	0.93	Os04g0608900	AK111698.1	-	Serine/threonine/tyrosine kinase	3e-10	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	7.2	0.93	Os10g0554100	AK071048.1	-	Oxysterol-binding protein family protein	8e-36	At2g31030	ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.93	Os05g0585500	AK070346.1	-	Calcium-dependent protein kinase	1e-12	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.250	1	GO:0008202	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7829.1.S1_at, orthologous to the query gene, Os06g0717100

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.41	59.6	Ta.7829.1.S1_at	At3g51250	-	-	2e-13	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.14478.1.A1_x_at	At3g51250	-	-	2e+0	At1g36272	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.6752.1.S1_at	At3g51250	-	-	3e-7	At4g15420	PRLI-interacting factor K	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.16698.1.S1_at	At3g51250	-	-	9e-2	At1g61920	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.4636.1.S1_a_at	At3g51250	-	-	3e-3	At4g33400	dem protein-related / defective embryo and meristems protein-related	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.6521.1.S1_at	At3g51250	-	-	2e+0	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.14478.1.A1_at	At3g51250	-	-	2e+0	At1g36272	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.14513.1.S1_at	At3g51250	-	-	2e-4	At1g12710	AtPP2-A12 (Phloem protein 2-A12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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