CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0717100

Gene name
Homology with Arabidopsis Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)

Module size 6 genes

NF 0.31

%ile 33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.91 Os06g0717100 AK071437.1 - Senescence-associated family protein 9e-4 At3g51250 senescence/dehydration-associated protein-related O.I. H.G. S.X.
0.80 94.6 0.92 Os02g0685900 C22384 - Calcium dependent protein kinase 1e-16 At4g38230 CPK26 O.I. H.G. S.X.
0.50 68.0 0.92 Os01g0672800 AK101605.1 - Protein of unknown function DUF1421 family protein 3e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) O.I. H.G. S.X.
0.46 60.9 0.93 Os04g0608900 AK111698.1 - Serine/threonine/tyrosine kinase 3e-10 At4g31170 protein kinase family protein O.I. H.G. S.X.
0.12 7.2 0.93 Os10g0554100 AK071048.1 - Oxysterol-binding protein family protein 8e-36 At2g31030 ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B) O.I. H.G. S.X.
0.11 6.5 0.93 Os05g0585500 AK070346.1 - Calcium-dependent protein kinase 1e-12 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.48	63.7	0.91	Os06g0717100	AK071437.1	-	Senescence-associated family protein	9e-4	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.
0.80	94.6	0.92	Os02g0685900	C22384	-	Calcium dependent protein kinase	1e-16	At4g38230	CPK26	O.I.	H.G.	S.X.
0.50	68.0	0.92	Os01g0672800	AK101605.1	-	Protein of unknown function DUF1421 family protein	3e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.
0.46	60.9	0.93	Os04g0608900	AK111698.1	-	Serine/threonine/tyrosine kinase	3e-10	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.
0.12	7.2	0.93	Os10g0554100	AK071048.1	-	Oxysterol-binding protein family protein	8e-36	At2g31030	ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)	O.I.	H.G.	S.X.
0.11	6.5	0.93	Os05g0585500	AK070346.1	-	Calcium-dependent protein kinase	1e-12	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.2	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.250	1	GO:0008202	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Inter-species module comparison

A co-expression module including the barley gene, Contig9737_s_at, orthologous to the query gene, Os06g0717100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.2 Contig9737_s_at At3g51250 - - 8e-9 At3g51250 senescence/dehydration-associated protein-related O.I. H.G. S.X.
0.47 62.2 Contig11248_at At3g51250 - - 2e+0 At1g75550 glycine-rich protein O.I. H.G. S.X.
0.43 56.4 Contig7588_at At3g51250 - - 5e-1 At4g26230 60S ribosomal protein L31 (RPL31B) O.I. H.G. S.X.
0.37 47.9 Contig10300_at At3g51250 - - 4e-2 At4g21740 unknown protein O.I. H.G. S.X.
0.37 47.9 Contig24322_at At3g51250 - - 5e+0 At2g04425 LCR82 (Low-molecular-weight cysteine-rich 82) O.I. H.G. S.X.
0.37 47.9 Contig15509_at At3g51250 - - 2e-3 At1g10522 unknown protein O.I. H.G. S.X.
0.33 42.6 Contig11383_at At3g51250 - - 2e+0 At4g36560 unknown protein O.I. H.G. S.X.
0.31 38.6 HM11D03r_s_at At3g51250 - - 8e-4 At2g24300 calmodulin-binding protein O.I. H.G. S.X.
0.30 37.0 Contig11789_at At3g51250 - - 2e+0 At3g04620 nucleic acid binding O.I. H.G. S.X.
0.30 37.0 Contig9797_at At3g51250 - - 1e-2 At1g23010 LPR1 (Low Phosphate Root1) O.I. H.G. S.X.
0.29 35.5 Contig6491_at At3g51250 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.29 35.5 Contig4158_at At3g51250 - - 8e-63 At1g60780 HAP13 (HAPLESS 13) O.I. H.G. S.X.
0.27 32.1 Contig15654_at At3g51250 - - 8e+0 At5g16160 unknown protein O.I. H.G. S.X.
0.26 30.4 Contig9995_at At3g51250 - - 7e-4 At2g22300 SR1 (SIGNAL RESPONSIVE 1) O.I. H.G. S.X.
0.25 28.9 Contig9507_at At3g51250 - - 6e-1 At2g43950 OEP37 O.I. H.G. S.X.
0.25 28.9 Contig18587_at At3g51250 - - 3e-2 At5g10320 unknown protein O.I. H.G. S.X.
0.23 26.1 Contig12484_at At3g51250 - - 8e-5 At5g02580 unknown protein O.I. H.G. S.X.
0.23 26.1 Contig20549_at At3g51250 - - 2e-27 At2g39480 PGP6 (P-GLYCOPROTEIN 6) O.I. H.G. S.X.
0.17 16.9 Contig13468_at At3g51250 - - 2e+0 At2g33850 unknown protein O.I. H.G. S.X.
0.16 15.3 Contig25651_at At3g51250 - - 5e-1 At2g41225 unknown protein O.I. H.G. S.X.
0.13 11.6 Contig5487_s_at At3g51250 - - 3e-1 At5g65207 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.2	Contig9737_s_at	At3g51250	-	-	8e-9	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.
0.47	62.2	Contig11248_at	At3g51250	-	-	2e+0	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.43	56.4	Contig7588_at	At3g51250	-	-	5e-1	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.
0.37	47.9	Contig10300_at	At3g51250	-	-	4e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.
0.37	47.9	Contig24322_at	At3g51250	-	-	5e+0	At2g04425	LCR82 (Low-molecular-weight cysteine-rich 82)	O.I.	H.G.	S.X.
0.37	47.9	Contig15509_at	At3g51250	-	-	2e-3	At1g10522	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	Contig11383_at	At3g51250	-	-	2e+0	At4g36560	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	HM11D03r_s_at	At3g51250	-	-	8e-4	At2g24300	calmodulin-binding protein	O.I.	H.G.	S.X.
0.30	37.0	Contig11789_at	At3g51250	-	-	2e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.
0.30	37.0	Contig9797_at	At3g51250	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	O.I.	H.G.	S.X.
0.29	35.5	Contig6491_at	At3g51250	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.29	35.5	Contig4158_at	At3g51250	-	-	8e-63	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.
0.27	32.1	Contig15654_at	At3g51250	-	-	8e+0	At5g16160	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	Contig9995_at	At3g51250	-	-	7e-4	At2g22300	SR1 (SIGNAL RESPONSIVE 1)	O.I.	H.G.	S.X.
0.25	28.9	Contig9507_at	At3g51250	-	-	6e-1	At2g43950	OEP37	O.I.	H.G.	S.X.
0.25	28.9	Contig18587_at	At3g51250	-	-	3e-2	At5g10320	unknown protein	O.I.	H.G.	S.X.
0.23	26.1	Contig12484_at	At3g51250	-	-	8e-5	At5g02580	unknown protein	O.I.	H.G.	S.X.
0.23	26.1	Contig20549_at	At3g51250	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.
0.17	16.9	Contig13468_at	At3g51250	-	-	2e+0	At2g33850	unknown protein	O.I.	H.G.	S.X.
0.16	15.3	Contig25651_at	At3g51250	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.
0.13	11.6	Contig5487_s_at	At3g51250	-	-	3e-1	At5g65207	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os06g0717100
Gene name
Homology with Arabidopsis	Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)
Module size	6 genes
NF	0.31
%ile	33.8

Co-expression analysis

Gene ID Os06g0717100 Gene name Homology with ArabidopsisSimilar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4) Module size 6 genes NF 0.31 %ile 33.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.2501GO:0008202The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os06g0717100

Gene name
Homology with Arabidopsis Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)

Module size 6 genes

NF 0.31

%ile 33.8

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays