CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0717100

Gene name
Homology with Arabidopsis Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)

Module size 6 genes

NF 0.31

%ile 33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.91 Os06g0717100 AK071437.1 - Senescence-associated family protein 9e-4 At3g51250 senescence/dehydration-associated protein-related O.I. H.G. S.X.
0.80 94.6 0.92 Os02g0685900 C22384 - Calcium dependent protein kinase 1e-16 At4g38230 CPK26 O.I. H.G. S.X.
0.50 68.0 0.92 Os01g0672800 AK101605.1 - Protein of unknown function DUF1421 family protein 3e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) O.I. H.G. S.X.
0.46 60.9 0.93 Os04g0608900 AK111698.1 - Serine/threonine/tyrosine kinase 3e-10 At4g31170 protein kinase family protein O.I. H.G. S.X.
0.12 7.2 0.93 Os10g0554100 AK071048.1 - Oxysterol-binding protein family protein 8e-36 At2g31030 ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B) O.I. H.G. S.X.
0.11 6.5 0.93 Os05g0585500 AK070346.1 - Calcium-dependent protein kinase 1e-12 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.48	63.7	0.91	Os06g0717100	AK071437.1	-	Senescence-associated family protein	9e-4	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.
0.80	94.6	0.92	Os02g0685900	C22384	-	Calcium dependent protein kinase	1e-16	At4g38230	CPK26	O.I.	H.G.	S.X.
0.50	68.0	0.92	Os01g0672800	AK101605.1	-	Protein of unknown function DUF1421 family protein	3e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.
0.46	60.9	0.93	Os04g0608900	AK111698.1	-	Serine/threonine/tyrosine kinase	3e-10	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.
0.12	7.2	0.93	Os10g0554100	AK071048.1	-	Oxysterol-binding protein family protein	8e-36	At2g31030	ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B)	O.I.	H.G.	S.X.
0.11	6.5	0.93	Os05g0585500	AK070346.1	-	Calcium-dependent protein kinase	1e-12	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.2	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.250	1	GO:0008202	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.50018.1.S1_s_at, orthologous to the query gene, Os06g0717100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 GmaAffx.50018.1.S1_s_at At3g51250 - - 6e-2 At5g09310 unknown protein O.I. H.G. S.X.
0.46 65.5 Gma.12172.3.S1_a_at At3g51250 - - 9e-7 At1g09920 TRAF-type zinc finger-related O.I. H.G. S.X.
0.41 58.1 Gma.2742.2.S1_at At3g51250 - - 1e-6 At3g63310 glutamate binding O.I. H.G. S.X.
0.38 53.3 GmaAffx.67599.1.S1_at At3g51250 - - 7e-14 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.38 53.3 GmaAffx.81775.1.S1_at At3g51250 - - 3e-4 At4g15410 PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma) O.I. H.G. S.X.
0.36 50.8 Gma.17399.1.S1_at At3g51250 - - 1e-10 At4g33910 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.36 50.8 Gma.5244.3.S1_a_at At3g51250 - - 1e-32 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.34 47.2 Gma.739.1.S1_at At3g51250 - - 6e-15 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.32 43.7 GmaAffx.65487.1.S1_at At3g51250 - - 4e-28 At3g11270 MEE34 (maternal effect embryo arrest 34) O.I. H.G. S.X.
0.31 42.2 Gma.3977.2.S1_a_at At3g51250 - - 7e-14 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) O.I. H.G. S.X.
0.31 42.2 GmaAffx.81059.1.S1_at At3g51250 - - 1e-12 At4g30390 unknown protein O.I. H.G. S.X.
0.30 40.4 GmaAffx.39867.1.S1_at At3g51250 cysteine synthase - 5e-24 At3g04940 CYSD1 (CYSTEINE SYNTHASE D1) O.I. H.G. S.X.
0.30 40.4 GmaAffx.37006.2.S1_at At3g51250 - - 2e-11 At4g20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) O.I. H.G. S.X.
0.29 39.0 Gma.16051.1.S1_at At3g51250 - - 6e-25 At3g04780 - O.I. H.G. S.X.
0.27 35.7 GmaAffx.93466.1.S1_s_at At3g51250 - - 3e-10 At2g31305 INH3 (INHIBITOR-3) O.I. H.G. S.X.
0.27 35.7 GmaAffx.22627.1.S1_x_at At3g51250 - - 4e-2 At1g18520 TET11 (TETRASPANIN11) O.I. H.G. S.X.
0.27 35.7 GmaAffx.92119.1.S1_s_at At3g51250 - - 2e-11 At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.26 33.9 Gma.6207.1.S1_s_at At3g51250 - - 7e-16 At4g19640 ARA7 O.I. H.G. S.X.
0.25 32.6 Gma.7598.2.S1_a_at At3g51250 - - 4e+0 At3g52090 NRPB11 O.I. H.G. S.X.
0.25 32.6 Gma.13169.1.S1_at At3g51250 - - 1e-48 At3g01150 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) O.I. H.G. S.X.
0.25 32.6 GmaAffx.91170.1.S1_x_at At3g51250 - - 5e-58 At3g46060 ATRAB8A O.I. H.G. S.X.
0.21 26.6 Gma.17436.1.S1_at At3g51250 - - 4e-23 At4g36450 ATMPK14 (Mitogen-activated protein kinase 14) O.I. H.G. S.X.
0.21 26.6 Gma.11202.1.S1_s_at At3g51250 - - 3e-20 At1g27310 NTF2A (NUCLEAR TRANSPORT FACTOR 2A) O.I. H.G. S.X.
0.20 25.1 GmaAffx.93267.1.S1_s_at At3g51250 nodulin 35 - 3e-10 At2g26230 uricase / urate oxidase / nodulin 35, putative O.I. H.G. S.X.
0.20 25.1 Gma.5377.1.S1_at At3g51250 - - 6e+0 At5g07100 WRKY26 O.I. H.G. S.X.
0.19 23.7 GmaAffx.92802.1.S1_s_at At3g51250 - - 8e-33 At1g75440 UBC16 (ubiquitin-conjugating enzyme 16) O.I. H.G. S.X.
0.18 22.3 GmaAffx.85336.1.S1_at At3g51250 - - 5e-18 At1g69510 - O.I. H.G. S.X.
0.16 19.7 Gma.10826.5.S1_x_at At3g51250 - - 2e-108 At5g55190 RAN3 (RAN GTPASE 3) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	GmaAffx.50018.1.S1_s_at	At3g51250	-	-	6e-2	At5g09310	unknown protein	O.I.	H.G.	S.X.
0.46	65.5	Gma.12172.3.S1_a_at	At3g51250	-	-	9e-7	At1g09920	TRAF-type zinc finger-related	O.I.	H.G.	S.X.
0.41	58.1	Gma.2742.2.S1_at	At3g51250	-	-	1e-6	At3g63310	glutamate binding	O.I.	H.G.	S.X.
0.38	53.3	GmaAffx.67599.1.S1_at	At3g51250	-	-	7e-14	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.
0.38	53.3	GmaAffx.81775.1.S1_at	At3g51250	-	-	3e-4	At4g15410	PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma)	O.I.	H.G.	S.X.
0.36	50.8	Gma.17399.1.S1_at	At3g51250	-	-	1e-10	At4g33910	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.36	50.8	Gma.5244.3.S1_a_at	At3g51250	-	-	1e-32	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.
0.34	47.2	Gma.739.1.S1_at	At3g51250	-	-	6e-15	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.
0.32	43.7	GmaAffx.65487.1.S1_at	At3g51250	-	-	4e-28	At3g11270	MEE34 (maternal effect embryo arrest 34)	O.I.	H.G.	S.X.
0.31	42.2	Gma.3977.2.S1_a_at	At3g51250	-	-	7e-14	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.
0.31	42.2	GmaAffx.81059.1.S1_at	At3g51250	-	-	1e-12	At4g30390	unknown protein	O.I.	H.G.	S.X.
0.30	40.4	GmaAffx.39867.1.S1_at	At3g51250	cysteine synthase	-	5e-24	At3g04940	CYSD1 (CYSTEINE SYNTHASE D1)	O.I.	H.G.	S.X.
0.30	40.4	GmaAffx.37006.2.S1_at	At3g51250	-	-	2e-11	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.
0.29	39.0	Gma.16051.1.S1_at	At3g51250	-	-	6e-25	At3g04780	-	O.I.	H.G.	S.X.
0.27	35.7	GmaAffx.93466.1.S1_s_at	At3g51250	-	-	3e-10	At2g31305	INH3 (INHIBITOR-3)	O.I.	H.G.	S.X.
0.27	35.7	GmaAffx.22627.1.S1_x_at	At3g51250	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	O.I.	H.G.	S.X.
0.27	35.7	GmaAffx.92119.1.S1_s_at	At3g51250	-	-	2e-11	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.
0.26	33.9	Gma.6207.1.S1_s_at	At3g51250	-	-	7e-16	At4g19640	ARA7	O.I.	H.G.	S.X.
0.25	32.6	Gma.7598.2.S1_a_at	At3g51250	-	-	4e+0	At3g52090	NRPB11	O.I.	H.G.	S.X.
0.25	32.6	Gma.13169.1.S1_at	At3g51250	-	-	1e-48	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.25	32.6	GmaAffx.91170.1.S1_x_at	At3g51250	-	-	5e-58	At3g46060	ATRAB8A	O.I.	H.G.	S.X.
0.21	26.6	Gma.17436.1.S1_at	At3g51250	-	-	4e-23	At4g36450	ATMPK14 (Mitogen-activated protein kinase 14)	O.I.	H.G.	S.X.
0.21	26.6	Gma.11202.1.S1_s_at	At3g51250	-	-	3e-20	At1g27310	NTF2A (NUCLEAR TRANSPORT FACTOR 2A)	O.I.	H.G.	S.X.
0.20	25.1	GmaAffx.93267.1.S1_s_at	At3g51250	nodulin 35	-	3e-10	At2g26230	uricase / urate oxidase / nodulin 35, putative	O.I.	H.G.	S.X.
0.20	25.1	Gma.5377.1.S1_at	At3g51250	-	-	6e+0	At5g07100	WRKY26	O.I.	H.G.	S.X.
0.19	23.7	GmaAffx.92802.1.S1_s_at	At3g51250	-	-	8e-33	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	O.I.	H.G.	S.X.
0.18	22.3	GmaAffx.85336.1.S1_at	At3g51250	-	-	5e-18	At1g69510	-	O.I.	H.G.	S.X.
0.16	19.7	Gma.10826.5.S1_x_at	At3g51250	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os06g0717100
Gene name
Homology with Arabidopsis	Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)
Module size	6 genes
NF	0.31
%ile	33.8

Co-expression analysis

Gene ID Os06g0717100 Gene name Homology with ArabidopsisSimilar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4) Module size 6 genes NF 0.31 %ile 33.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.2501GO:0008202The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os06g0717100

Gene name
Homology with Arabidopsis Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)

Module size 6 genes

NF 0.31

%ile 33.8

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays