CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0717100

Gene name
Homology with Arabidopsis Similar to At3g51250: senescence/dehydration-associated protein-related (HF=9e-4)

Module size 6 genes

NF 0.31

%ile 33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.91 Os06g0717100 AK071437.1 - Senescence-associated family protein 9e-4 At3g51250 senescence/dehydration-associated protein-related O.I. H.G. S.X.
0.80 94.6 0.92 Os02g0685900 C22384 - Calcium dependent protein kinase 1e-16 At4g38230 CPK26 O.I. H.G. S.X.
0.50 68.0 0.92 Os01g0672800 AK101605.1 - Protein of unknown function DUF1421 family protein 3e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) O.I. H.G. S.X.
0.46 60.9 0.93 Os04g0608900 AK111698.1 - Serine/threonine/tyrosine kinase 3e-10 At4g31170 protein kinase family protein O.I. H.G. S.X.
0.12 7.2 0.93 Os10g0554100 AK071048.1 - Oxysterol-binding protein family protein 8e-36 At2g31030 ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B) O.I. H.G. S.X.
0.11 6.5 0.93 Os05g0585500 AK070346.1 - Calcium-dependent protein kinase 1e-12 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g51250, orthologous to the query gene, Os06g0717100

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.25 22.6 At3g51250 824288 senescence/dehydration-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. H.G. S.X.
0.22 17.5 At5g51710 835245 KEA5 member of Putative potassium proton antiporter family O.I. H.G. S.X.
0.17 10.2 At2g22740 816804 SUVH6 Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain. O.I. H.G. S.X.
0.09 2.8 At4g13020 826915 MHK Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis. O.I. H.G. S.X.
0.05 1.1 At5g55310 835624 TOP1BETA (DNA TOPOISOMERASE 1 BETA) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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