CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0703600

Gene name
Homology with Arabidopsis Similar to At5g23540: 26S proteasome regulatory subunit, putative (HF=1e-2)

Module size 6 genes

NF 0.22

%ile 20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.98 Os06g0703600 AK110999.1 - 26S proteasome non-ATPase regulatory subunit 14(26S proteasome regulatory subunit rpn11) 1e-2 At5g23540 26S proteasome regulatory subunit, putative O.I. H.G. S.X.
0.44 58.1 0.98 Os01g0258300 9629.m01525 - - 2e+1 At4g37235 unknown protein O.I. H.G. S.X.
0.33 38.8 0.98 Os02g0193400 9630.m00916 - - 2e-3 At3g25640 unknown protein O.I. H.G. S.X.
0.30 32.7 0.98 Os09g0518400 9637.m02958 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 3e-4 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) O.I. H.G. S.X.
0.14 9.3 0.98 Os06g0572766 9634.m03579 - - 7e+0 At5g17810 WOX12 (WUSCHEL related homeobox 12) O.I. H.G. S.X.
0.12 7.2 0.98 Os07g0606366 9635.m04157 - - 7e-1 At4g39320 microtubule-associated protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.9 98.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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