CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0700000

Gene name
Homology with Arabidopsis Similar to At2g19170: SLP3 (HF=1e-53)

Module size 13 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.93 Os06g0700000 AK102835.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e-53 At2g19170 SLP3 O.I. H.G. S.X.
0.73 91.1 0.94 Os05g0526400 CR284436 - Reticulon family protein 4e+0 At3g10260 reticulon family protein O.I. H.G. S.X.
0.69 87.9 0.95 Os02g0767000 AK122109.1 - Remorin, C-terminal region domain containingprotein 1e-9 At4g36970 remorin family protein O.I. H.G. S.X.
0.67 87.2 0.94 Os05g0555100 AJ272423.1 - Protein phosphatase 2A B'kappa subunit 1e+0 At5g03470 ATB' ALPHA O.I. H.G. S.X.
0.58 77.0 0.94 Os04g0455600 AK103788.1 - Conserved hypothetical protein 7e-7 At4g39860 unknown protein O.I. H.G. S.X.
0.55 73.7 0.95 Os02g0760200 AK063964.1 - Conserved hypothetical protein 1e-5 At4g24610 unknown protein O.I. H.G. S.X.
0.51 68.7 0.94 Os06g0308300 AK102553.1 - 65kD microtubule associated protein 3e-29 At5g55230 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1) O.I. H.G. S.X.
0.50 68.0 0.94 Os12g0613700 AK121703.1 - Transcriptional factor B3 family protein 9e-52 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) O.I. H.G. S.X.
0.44 58.1 0.97 Os07g0568000 AK072783.1 - Conserved hypothetical protein 2e-2 At1g10180 unknown protein O.I. H.G. S.X.
0.43 55.4 0.95 Os06g0284800 AK066358.1 - Spectrin repeat containing protein 9e+0 At5g60830 AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70) O.I. H.G. S.X.
0.31 34.5 0.94 Os10g0497600 AK103003.1 - Protein kinase domain containing protein 1e-25 At3g59110 protein kinase family protein O.I. H.G. S.X.
0.30 32.7 0.95 Os02g0200800 AB118005.1 - Targeting for Xklp2 family protein 6e-8 At4g32330 - O.I. H.G. S.X.
0.29 31.1 0.95 Os04g0681600 AK105243.1 - Protein of unknown function DUF580 family protein 4e-25 At3g15380 choline transporter-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.5 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.7 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.2 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.133 1 GO:0043086 Any process that stops or reduces the activity of an enzyme.
0.027 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage