CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0698600

Gene name
Homology with Arabidopsis Similar to At4g31540: ATEXO70G1 (exocyst subunit EXO70 family protein G1) (HF=4e-2)

Module size 7 genes

NF 0.34

%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.93 Os06g0698600 CR285483 - Exo70 exocyst complex subunit family protein 4e-2 At4g31540 ATEXO70G1 (exocyst subunit EXO70 family protein G1) O.I. H.G. S.X.
0.60 79.7 0.94 Os01g0276400 CB657087 - Presenilin 2 (PS-2) (ALG-3) (Alzheimer disease 4homolog). Splice isoform 2 4e-12 At1g08700 presenilin family protein O.I. H.G. S.X.
0.50 68.0 0.94 Os07g0250300 AK098969.1 - Conserved hypothetical protein 2e+0 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) O.I. H.G. S.X.
0.40 51.1 0.95 Os03g0186800 AK100356.1 - Modifier of rudimentary (Mod family protein 6e-4 At2g36680 - O.I. H.G. S.X.
0.31 34.5 0.94 Os03g0271600 AK067221.1 - Zn-finger, RING domain containing protein 7e-1 At4g11655 transmembrane protein, putative O.I. H.G. S.X.
0.25 24.1 0.94 Os02g0833300 AK069209.1 - Tumour susceptibility gene 101 family protein 2e-1 At4g30980 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.09 4.9 0.95 Os08g0110500 AK102080.1 - Arm repeat containing protein 3e-5 At2g23140 binding / ubiquitin-protein ligase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.4 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.077 1 GO:0006887 A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.
0.045 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.
0.034 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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