CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0696500

Gene name
Homology with Arabidopsis Similar to At5g57540: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (HF=7e-3)

Module size 10 genes

NF 0.65

%ile 87.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.83 Os06g0696500 9634.m04702 - Xyloglucan endo-transglycosylase precursor 7e-3 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. H.G. S.X.
0.76 92.2 0.85 Os01g0905400 AK063530.1 - Transcriptional factor B3 family protein 2e-2 At4g14580 CIPK4 (CBL-interacting protein kinase 4) O.I. H.G. S.X.
0.69 87.9 0.85 Os01g0971600 AK070366.1 - Sn-glycerol-3-phosphate dehydrogenase (Fragment) 4e-12 At5g40610 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH O.I. H.G. S.X.
0.67 87.2 0.82 Os06g0261300 AK073534.1 - Hypothetical protein 5e+0 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) O.I. H.G. S.X.
0.67 87.2 0.91 Os12g0571500 AK119942.1 - Hypothetical protein 3e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.55 73.7 0.85 Os06g0660400 AK111110.1 - Conserved hypothetical protein 7e-5 At3g26790 FUS3 (FUSCA 3) O.I. H.G. S.X.
0.53 71.3 0.90 Os03g0730700 9631.m05092 - - 2e-1 At2g22980 serine-type carboxypeptidase O.I. H.G. S.X.
0.53 71.3 0.86 Os06g0246500 AK105105.1 - Pyruvate dehydrogenase E1 alpha subunit (EC1.2.4.1) 2e-29 At1g59900 AT-E1 ALPHA O.I. H.G. S.X.
0.50 68.0 0.85 Os08g0338500 AK107751.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 2e-2 At5g40860 unknown protein O.I. H.G. S.X.
0.50 68.0 0.92 Os12g0250800 CF318760 - Hypothetical protein 4e+0 At5g04390 zinc finger (C2H2 type) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.0 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0046168 The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
0.105 1 GO:0006072 The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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