Co-expression analysis

Gene ID	Os06g0666400
Gene name
Homology with Arabidopsis	Similar to At4g15120: VQ motif-containing protein (HF=6e+0)
Module size	6 genes
NF	0.29
%ile	29.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	79.7	0.84	Os06g0666400	AK108002.1	-	VQ domain containing protein	6e+0	At4g15120	VQ motif-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.86	Os05g0540900	AK072284.1	-	-	4e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.86	Os02g0527200	AK058851.1	-	Conserved hypothetical protein	5e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	0.87	Os04g0497000	AK109382.2	-	(+)-pulegone reductase	5e-5	At3g03080	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	0.87	Os01g0295700	AK070333.1	-	Protein phosphatase-2C	5e-5	At2g33700	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	0.86	Os01g0884300	AK068392.1	-	No apical meristem (NAM) protein domain containingprotein	7e-29	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.2	98.9	GSM195222	Ovary 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
16.6	98.8	GSM195221	Ovary 1, biological rep 1	GSE7951	Genome-wide gene expression profiling of rice stigma
15.9	98.7	GSM195223	Ovary 3, biological rep 3	GSE7951	Genome-wide gene expression profiling of rice stigma
15.1	98.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.6	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.038	1	GO:0006470	The process of removing one or more phosphoric residues from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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