Co-expression analysis

Gene ID Os06g0662000
Gene name
Homology with ArabidopsisSimilar to At1g78900: VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) (HF=0)
Module size 6 genes
NF 0.84
%ile 99.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.98Os06g0662000AK071775.1-Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit)0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.8395.80.98Os05g0593100AK061855.1-Vacuolar ATP synthase subunit C (EC 3.6.3.14)(V-ATPase C subunit) (Vacuolar proton pump C subunit)2e-10At1g12840DET3 (DE-ETIOLATED 3)O.I.H.G.S.X.
0.8395.80.98Os11g0169900U27098.1-Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)(Fragment)4e-63At1g75630AVA-P4O.I.H.G.S.X.
0.8094.60.98Os01g0610100AK059810.1-Vacuolar ATP synthase 21 kDa proteolipid subunit(EC 3.6.3.14) (23-kDa subunit of V-ATPase)4e-23At2g25610H+-transporting two-sector ATPase, C subunit family proteinO.I.H.G.S.X.
0.7391.10.98Os12g0168900AK071641.1--4e-51At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.6079.70.98Os06g0568200AF375052.1-Vacuolar ATPase B subunit4e-111At1g20260hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanismO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.898.1GSM1952305d-seedGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.497.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.297.1GSM154832Root_DMSO-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
6.197.1GSM154831Root_DMSO-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in riceLink to GEO
5.997.0GSM154829Root_DMSO-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
5.296.7GSM275410Bala root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
4.996.5GSM154940Root_DMSO-treatment_120min_replicate 2GSE6719Cytokinin responsive genes in riceLink to GEO
4.896.5GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.796.4GSM154943Root_tZ-treatment_120min_replicate 2GSE6719Cytokinin responsive genes in riceLink to GEO
4.596.3GSM154941Root_DMSO-treatment_120min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0015988The transport of protons against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport.Link to AmiGO
0.1742GO:0006818The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.Link to AmiGO
0.1111GO:0006754The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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