Co-expression analysis

Gene ID Os06g0660700
Gene name
Homology with ArabidopsisSimilar to At5g05080: UBC22 (ubiquitin-conjugating enzyme 22) (HF=1e-17)
Module size 6 genes
NF 0.33
%ile 37.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5676.30.96Os06g0660700AK058614.1-Ubiquitin-conjugating enzyme E2S (EC 6.3.2.19)(Ubiquitin-conjugating enzyme E2-24 kDa)(Ubiquitin-protein ligase) (Ubiquitin carrier protein)(E2-EPF5)1e-17At5g05080UBC22 (ubiquitin-conjugating enzyme 22)O.I.H.G.S.X.
0.4660.90.95Os05g0466600AK119240.1--7e-18At5g59690histone H4O.I.H.G.S.X.
0.4253.90.95Os03g0831200AK073709.1-Zn-finger, GATA type domain containing protein1e-1At5g28630glycine-rich proteinO.I.H.G.S.X.
0.2727.50.95Os04g0662800AK102939.1-HMG-I and HMG-Y, DNA-binding domain containingprotein1e-18At1g19880regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.2727.50.95Os12g0541400BQ907958-Hypothetical protein3e+0At5g01300phosphatidylethanolamine-binding family proteinO.I.H.G.S.X.
0.1915.10.95Os03g0108800AK065932.1-Cell division control protein 2 homolog 1 (EC2.7.1.37)8e-4At3g48750CDC2 (CELL DIVISION CONTROL 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.599.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
12.798.4GSM154937Root_tZ-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in riceLink to GEO
12.298.3GSM154833Root_tZ-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
11.798.2GSM154938Root_tZ-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
9.497.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM154944Root_tZ-treatment_120min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
8.497.7GSM154942Root_tZ-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
7.897.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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