CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0660200

Gene name
Homology with Arabidopsis Similar to At1g70940: PIN3 (PIN-FORMED 3) (HF=1e-15)

Module size 6 genes

NF 0.54

%ile 72.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.90 Os06g0660200 AK101191.1 - Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6) 1e-15 At1g70940 PIN3 (PIN-FORMED 3) O.I. H.G. S.X.
0.67 87.2 0.90 Os08g0253800 AK108045.1 - Glycosyl transferase, family 2 domain containingprotein 7e-14 At4g31590 ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) O.I. H.G. S.X.
0.53 71.3 0.89 Os04g0132500 AK121779.1 - Protein kinase domain containing protein 5e-4 At3g24240 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.47 62.3 0.88 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.
0.31 34.5 0.90 Os07g0573000 AK120026.1 - Conserved hypothetical protein 1e-3 At5g46030 unknown protein O.I. H.G. S.X.
0.27 27.5 0.89 Os03g0397400 AK069928.1 - Low affinity calcium transporter CAX2 (Fragment) 2e-5 At1g55720 ATCAX6 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.1 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.0 99.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.8 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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