CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0638500

Gene name
Homology with Arabidopsis Similar to At1g25540: PFT1 (PHYTOCHROME AND FLOWERING TIME 1) (HF=3e-4)

Module size 6 genes

NF 0.38

%ile 45.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.90 Os06g0638500 9634.m04167 - Protein kinase domain containing protein 3e-4 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) O.I. H.G. S.X.
0.47 62.3 0.93 Os01g0140400 AK103044.1 - Leucine-rich repeat, plant specific containingprotein 1e-1 At1g25570 leucine-rich repeat protein-related O.I. H.G. S.X.
0.46 60.9 0.94 Os12g0596600 AK064196.1 - Hypothetical protein 3e-4 At3g50780 - O.I. H.G. S.X.
0.38 46.9 0.94 Os02g0190500 AK111710.1 - Leucine-rich repeat transmembrane protein kinase 2 2e-18 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) O.I. H.G. S.X.
0.27 27.5 0.94 Os04g0685900 AK063635.1 - Receptor-like protein kinase-like protein(Fragment) 3e-2 At2g01820 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.
0.20 16.5 0.94 Os12g0565300 AK073968.1 - Calmodulin-binding protein MPCBP 2e-14 At2g43040 NPG1 (no pollen germination 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.7 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.7 99.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.2 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.6 98.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage