CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0625300

Gene name
Homology with Arabidopsis Similar to At5g60490: FLA12 (HF=6e-2)

Module size 7 genes

NF 0.39

%ile 47.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.99 Os06g0625300 9634.m04050 - Peptidoglycan-binding LysM domain containingprotein 6e-2 At5g60490 FLA12 O.I. H.G. S.X.
0.47 62.3 0.99 Os01g0974900 AA752404 - Hypothetical protein 8e-2 At2g39500 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os01g0301100 AK105556.1 - Conserved hypothetical protein 5e-1 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) O.I. H.G. S.X.
0.36 44.0 0.99 Os04g0464300 AK111143.1 - Conserved hypothetical protein 3e-2 At5g36710 unknown protein O.I. H.G. S.X.
0.31 34.5 0.99 Os02g0141400 AK106374.1 - Conserved hypothetical protein 1e+1 At5g47175 LCR3 (Low-molecular-weight cysteine-rich 3) O.I. H.G. S.X.
0.30 32.7 0.99 Os10g0345500 NM_195897.1 - - 1e+0 At5g14740 CA2 (CARBONIC ANHYDRASE 2) O.I. H.G. S.X.
0.25 24.1 0.99 Os08g0491500 9636.m03862 - - 3e+0 At2g18050 HIS1-3 (HISTONE H1-3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.3 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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