CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0612900

Gene name
Homology with Arabidopsis Similar to At5g12960: catalytic (HF=4e-7)

Module size 8 genes

NF 0.16

%ile 13.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.90 Os06g0612900 9634.m03944 - Conserved hypothetical protein 4e-7 At5g12960 catalytic O.I. H.G. S.X.
0.32 36.3 0.93 Os03g0712400 AK106604.1 - Atypical receptor-like kinase MARK 4e-3 At5g05160 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.26 25.6 0.92 Os04g0376400 9632.m02919 - Glycoside hydrolase, family 18 protein 2e-1 At1g62333 unknown protein O.I. H.G. S.X.
0.24 22.4 0.92 Os02g0816700 BI801460 - Conserved hypothetical protein 9e-1 At3g54310 unknown protein O.I. H.G. S.X.
0.21 17.9 0.92 Os08g0382800 AK066272.1 - Cyclin-like F-box domain containing protein 1e-2 At1g54640 F-box family protein-related O.I. H.G. S.X.
0.11 6.5 0.92 Os05g0530800 9633.m04257 - Hypothetical protein 2e-1 At2g39750 dehydration-responsive family protein O.I. H.G. S.X.
0.10 5.7 0.92 Os02g0107200 9630.m00074 - Diphosphomevalonate decarboxylase family protein 6e-14 At2g38700 MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) O.I. H.G. S.X.
0.09 4.9 0.93 Os04g0428900 AY336991.1 - COP9 protein (FUSCA protein FUS7) 8e-2 At4g33660 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.9 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.2 97.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.6 95.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.2 94.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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